Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 87.68 | 30.95 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 47.83 | 30.0 |
| KRH37298 | Soybean | cytosol | 60.14 | 21.9 |
| GSMUA_Achr11P... | Banana | cytosol | 52.9 | 21.16 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 57.97 | 20.46 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 57.25 | 19.9 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 57.25 | 19.9 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 56.52 | 19.85 |
| Bra003910.1-P | Field mustard | cytosol | 50.0 | 18.25 |
| CDY36678 | Canola | cytosol | 50.72 | 17.99 |
| CDX68298 | Canola | cytosol | 50.72 | 17.99 |
| AT1G71840.1 | Thale cress | nucleus | 52.9 | 17.94 |
| CDX72834 | Canola | cytosol | 50.72 | 17.59 |
| Os03t0685600-01 | Rice | cytosol | 50.0 | 17.51 |
| Bra016111.1-P | Field mustard | cytosol | 50.0 | 17.29 |
| CDX96351 | Canola | cytosol | 50.0 | 17.29 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 49.28 | 17.09 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 48.55 | 17.01 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 47.83 | 16.75 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 47.83 | 16.67 |
| HORVU3Hr1G013230.4 | Barley | cytosol | 47.83 | 16.5 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 47.1 | 16.37 |
| Zm00001d041945_P003 | Maize | cytosol | 49.28 | 16.0 |
| Zm00001d011779_P005 | Maize | cytosol | 48.55 | 13.67 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 47.1 | 13.4 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 47.1 | 13.1 |
| KRG94875 | Soybean | nucleus | 24.64 | 9.86 |
| KRH06660 | Soybean | nucleus | 24.64 | 9.86 |
| KRH50874 | Soybean | nucleus | 23.19 | 9.73 |
| KRH02239 | Soybean | nucleus | 22.46 | 9.37 |
| KRH59511 | Soybean | cytosol, nucleus | 20.29 | 9.33 |
| KRH43376 | Soybean | nucleus | 19.57 | 8.41 |
| KRH32024 | Soybean | cytosol | 18.84 | 8.15 |
| KRH71413 | Soybean | nucleus | 18.84 | 8.12 |
| KRH08668 | Soybean | nucleus | 23.91 | 6.88 |
| HORVU5Hr1G075920.16 | Barley | nucleus | 36.23 | 6.8 |
| KRH70275 | Soybean | nucleus | 23.19 | 6.67 |
| KRH03886 | Soybean | nucleus | 19.57 | 5.25 |
| KRH57171 | Soybean | cytosol | 19.57 | 5.25 |
| KRH35010 | Soybean | nucleus | 5.8 | 4.97 |
| KRH12069 | Soybean | nucleus | 15.94 | 4.62 |
| KRH37088 | Soybean | nucleus | 15.94 | 4.61 |
| KRH13395 | Soybean | nucleus | 23.19 | 4.48 |
| KRH20750 | Soybean | nucleus | 23.19 | 4.47 |
| KRH21524 | Soybean | cytosol | 6.52 | 4.0 |
| KRH49977 | Soybean | cytosol | 18.84 | 3.8 |
| KRH20528 | Soybean | cytosol | 18.84 | 3.34 |
| KRG93160 | Soybean | cytosol | 18.12 | 3.29 |
| KRH10790 | Soybean | cytosol | 19.57 | 3.27 |
| KRH56498 | Soybean | cytosol | 17.39 | 3.16 |
| KRH21526 | Soybean | cytosol, peroxisome | 13.04 | 3.01 |
| KRH55267 | Soybean | cytosol | 2.9 | 2.82 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | UniProt:A0A0R0HX19 | EMBL:ACUP02006648 | EnsemblPlantsGene:GLYMA_10G218500 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH35009 |
| ProteinID:KRH35009 | ProteinID:KRH35009.1 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19857 | PANTHER:PTHR19857:SF8 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0006EDAF04 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
hypothetical protein
Coordinates
chr10:-:45049984..45053117
Molecular Weight (calculated)
14590.3 Da
IEP (calculated)
4.840
GRAVY (calculated)
0.194
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCRVVDNNA LASHSDSIEC VGFAPSGSWA AVGGMDKKLI IWDIEHLLPR GTCEHEDGVS CLAWLGASYV ASGCVDGKVR LWDSRSGKCV KTLKGHSDAI
101: QSLSVSANHD YLVSASVDGT ACAFEVEIFG DNPCCIIA
101: QSLSVSANHD YLVSASVDGT ACAFEVEIFG DNPCCIIA
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.