CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35009	Soybean	cytosol	21.9	60.14
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	61.48	59.59
KRH35010	Soybean	nucleus	24.54	57.76
VIT_18s0164g00020.t01	Wine grape	nucleus	58.05	56.27
VIT_11s0016g02220.t01	Wine grape	cytosol	57.78	55.73
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	57.26	54.66
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	56.99	54.41
CDX68298	Canola	cytosol	54.88	53.47
CDY36678	Canola	cytosol	54.62	53.21
Bra003910.1-P	Field mustard	cytosol	53.03	53.17
CDX72834	Canola	cytosol	55.67	53.02
Bra016111.1-P	Field mustard	cytosol	55.41	52.63
AT1G71840.1	Thale cress	nucleus	56.46	52.58
CDX96351	Canola	cytosol	54.09	51.38
GSMUA_Achr11P...	Banana	cytosol	46.7	51.3
Os03t0685600-01	Rice	cytosol	50.13	48.22
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	49.08	46.97
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	48.81	46.6
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	48.81	46.48
TraesCS1B01G374800.1	Wheat	cytosol	47.23	45.43
TraesCS1D01G363000.1	Wheat	cytosol	46.97	45.18
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	25.86	44.55
HORVU3Hr1G013230.4	Barley	cytosol	46.97	44.5
Zm00001d041945_P003	Maize	cytosol	47.49	42.35
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	48.55	37.94
Zm00001d011779_P005	Maize	cytosol	47.76	36.94
HORVU2Hr1G022250.4	Barley	mitochondrion	48.02	36.69
KRH32024	Soybean	cytosol	18.21	21.63
KRH71413	Soybean	nucleus	17.94	21.25
KRH50874	Soybean	nucleus	18.21	20.97
KRH02239	Soybean	nucleus	17.94	20.54
KRG94875	Soybean	nucleus	17.41	19.13
KRH06660	Soybean	nucleus	17.41	19.13
KRH55267	Soybean	cytosol	7.12	19.01
HORVU5Hr1G075920.16	Barley	nucleus	35.62	18.37
KRH59511	Soybean	cytosol, nucleus	14.51	18.33
KRH08668	Soybean	nucleus	21.37	16.88
KRH70275	Soybean	nucleus	20.58	16.25
KRH43376	Soybean	nucleus	13.46	15.89
KRH21524	Soybean	cytosol	9.23	15.56
KRH57171	Soybean	cytosol	17.41	12.84
KRH12069	Soybean	nucleus	15.83	12.61
KRH37088	Soybean	nucleus	15.83	12.58
KRH03886	Soybean	nucleus	16.36	12.06
KRG93160	Soybean	cytosol	15.04	7.51
KRH56498	Soybean	cytosol	14.78	7.38
KRH20528	Soybean	cytosol	14.51	7.07
KRH10790	Soybean	cytosol	15.3	7.03
KRH20750	Soybean	nucleus	13.19	6.98
KRH13395	Soybean	nucleus	12.93	6.86
KRH49977	Soybean	cytosol	11.87	6.57
KRH21526	Soybean	cytosol, peroxisome	5.54	3.51

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02005437	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_09G057500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0030687	GO:GO:0042273
GO:GO:0051082	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7LC07	EnsemblPlants:KRH37298
ProteinID:KRH37298	ProteinID:KRH37298.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998
UniParc:UPI000294868B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:5213483..5217962

Molecular Weight (calculated)

41606.1 Da

IEP (calculated)

4.190

GRAVY (calculated)

-0.167

Length

379 amino acids

Sequence
(BLAST)

001: MSGHVAPPIY EYNDEVISDE FFLDESDILH ELSMDDEDLP DVDDDSETEH VEEVDDAIDT FKSHNGELYA VACSPTDATL VATGGGDDRG FLWKIGEKGD
101: WVSELQGHKD SVSSLAFSYD GQFLASGCFH GIVQVWDAYG NLKNVFEGLG GGIEWLRWHP RQRTLLAGSE DFNVWIWNAT DRITPPYLLC WSSWQWETIC
201: TGSADKTLRI WNSSGTSHGY HTKGLTCLAI SSNSTLALTG SEDGSAYIVK IDGGKVIDFV ASHPDSIECV GFSPSDSLAA IGGMDQRLVI WDIQHFLSRA
301: TCDHEGGVTC MTWVGSSCVA TGCVDGIVRL WDIRSGECVE KFRGHSDAIQ SLSVSANGDY IVSVSLDHTA RVFEVRMFQ

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.