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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG94875 Soybean nucleus 98.84 98.84
VIT_05s0094g00800.t01 Wine grape cytosol 89.57 89.83
Bra003387.1-P Field mustard cytosol 84.35 86.61
Solyc03g059100.1.1 Tomato nucleus 81.74 86.5
PGSC0003DMT400067694 Potato cytosol 85.22 86.47
AT2G43770.1 Thale cress cytosol 85.51 86.01
GSMUA_Achr3P04370_001 Banana cytosol 77.1 82.61
CDX67810 Canola cytosol 84.64 81.34
Zm00001d046930_P001 Maize cytosol, extracellular, plasma membrane 75.94 80.37
Zm00001d036709_P001 Maize cytosol 75.36 79.75
EER90141 Sorghum plastid 78.84 79.3
Os06t0653800-01 Rice nucleus 77.39 77.84
TraesCS7B01G406900.1 Wheat cytosol, plastid 76.52 76.3
HORVU7Hr1G111780.2 Barley cytosol, plastid 76.23 76.01
TraesCS7A01G499900.1 Wheat nucleus 76.23 76.01
TraesCS7D01G486800.1 Wheat cytosol, plastid 75.94 75.72
Bra004783.1-P Field mustard cytosol, golgi 81.16 67.47
CDX79802 Canola cytosol, golgi 81.16 67.47
CDY17912 Canola cytosol, golgi 81.16 67.15
CDX98392 Canola endoplasmic reticulum, extracellular 84.06 65.46
KRH50874 Soybean nucleus 26.09 27.36
KRH02239 Soybean nucleus 25.8 26.89
KRH71413 Soybean nucleus 24.93 26.88
KRH32024 Soybean cytosol 24.64 26.65
KRH59511 Soybean cytosol, nucleus 22.9 26.33
KRH35009 Soybean cytosol 9.86 24.64
KRH43376 Soybean nucleus 22.9 24.61
KRH21524 Soybean cytosol 15.65 24.0
KRH55267 Soybean cytosol 8.41 20.42
KRG91764 Soybean cytoskeleton, cytosol, nucleus 22.32 19.69
KRH70275 Soybean nucleus 24.64 17.71
KRH08668 Soybean nucleus 24.64 17.71
KRH37298 Soybean cytosol 19.13 17.41
KRH57171 Soybean cytosol 24.06 16.15
KRH03886 Soybean nucleus 23.77 15.95
KRH12069 Soybean nucleus 18.84 13.66
KRH37088 Soybean nucleus 18.84 13.63
KRH35010 Soybean nucleus 6.09 13.04
KRH20750 Soybean nucleus 20.58 9.92
KRG93160 Soybean cytosol 21.74 9.88
KRH13395 Soybean nucleus 20.29 9.8
KRH56498 Soybean cytosol 21.45 9.75
KRH20528 Soybean cytosol 20.58 9.13
KRH10790 Soybean cytosol 20.29 8.48
KRH49977 Soybean cytosol 15.65 7.88
KRH21526 Soybean cytosol, peroxisome 4.93 2.84
Protein Annotations
EntrezGene:100789793MapMan:16.4.1.4.3Gene3D:2.130.10.10EMBL:ACUP02009855EMBL:BT097899UniProt:C6TJP9
InterPro:G-protein_beta_WD-40_repEnsemblPlantsGene:GLYMA_16G037700GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986EnsemblPlants:KRH06660ProteinID:KRH06660ProteinID:KRH06660.1PFAM:PF00400
PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR44006SMART:SM00320
SUPFAM:SSF50978UniParc:UPI0001B167E5InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf:::::
Description
hypothetical protein
Coordinates
chr16:-:3567350..3571451
Molecular Weight (calculated)
38272.6 Da
IEP (calculated)
7.070
GRAVY (calculated)
-0.412
Length
345 amino acids
Sequence
(BLAST)
001: MQVFSIEGES ALSVVGPRPM EWSTVPYNAP QAPGPNGKQR TSSLESPIML LSGHQSAIYT MKFNPAGSVI ASGSHDREIF LWNVHGDCKN FMVLKGHKNA
101: VLDLHWTTDG TQIVSASPDK TVRAWDVETG KQIKKMVEHL SYVNSCCPSR RGPPLVVSGS DDGTAKLWDM RQRGSIQTFP DKYQITAVGF SDASDKIFTG
201: GIDNDVKIWD LRKGEVTMTL QGHQDMITDM QLSPDGSYLL TNGMDCKLCI WDMRPYAPQN RCVKVLEGHQ HNFEKNLLKC GWSPDGSKVT AGSSDRMVYI
301: WDTTSRRILY KLPGHNGSVN ECVFHPNEPI IGSCSSDKQI YLGEI
Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)
001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
Arabidopsis Description
At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.