Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G486800.1 | Wheat | cytosol, plastid | 99.71 | 99.71 |
| TraesCS7B01G406900.1 | Wheat | cytosol, plastid | 99.71 | 99.71 |
| HORVU7Hr1G111780.2 | Barley | cytosol, plastid | 99.42 | 99.42 |
| EER90141 | Sorghum | plastid | 94.8 | 95.63 |
| Zm00001d046930_P001 | Maize | cytosol, extracellular, plasma membrane | 89.6 | 95.09 |
| Os06t0653800-01 | Rice | nucleus | 94.22 | 95.04 |
| Zm00001d036709_P001 | Maize | cytosol | 89.31 | 94.79 |
| GSMUA_Achr3P04370_001 | Banana | cytosol | 75.72 | 81.37 |
| VIT_05s0094g00800.t01 | Wine grape | cytosol | 77.75 | 78.2 |
| Solyc03g059100.1.1 | Tomato | nucleus | 73.12 | 77.61 |
| Bra003387.1-P | Field mustard | cytosol | 74.57 | 76.79 |
| KRH06660 | Soybean | nucleus | 76.01 | 76.23 |
| PGSC0003DMT400067694 | Potato | cytosol | 74.86 | 76.18 |
| AT2G43770.1 | Thale cress | cytosol | 75.43 | 76.09 |
| KRG94875 | Soybean | nucleus | 75.43 | 75.65 |
| CDX67810 | Canola | cytosol | 75.43 | 72.7 |
| CDX79802 | Canola | cytosol, golgi | 75.72 | 63.13 |
| Bra004783.1-P | Field mustard | cytosol, golgi | 75.72 | 63.13 |
| CDY17912 | Canola | cytosol, golgi | 76.01 | 63.07 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 73.99 | 57.79 |
| TraesCS4A01G258000.1 | Wheat | cytosol | 26.59 | 28.48 |
| TraesCS2A01G196900.1 | Wheat | plastid | 24.28 | 25.38 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 15.9 | 25.0 |
| TraesCS6A01G250200.1 | Wheat | cytosol | 20.81 | 24.0 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 22.83 | 19.9 |
| TraesCS1A01G443600.1 | Wheat | cytosol | 24.28 | 17.68 |
| TraesCS3A01G175600.2 | Wheat | plastid | 18.5 | 13.39 |
| TraesCS5A01G293600.2 | Wheat | nucleus | 19.08 | 9.28 |
| TraesCS1A01G164300.1 | Wheat | cytosol | 20.52 | 8.72 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 20.23 | 8.42 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 21.97 | 8.22 |
Protein Annotations
| MapMan:16.4.1.4.3 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44006 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS7A01G499900 |
| EnsemblPlants:TraesCS7A01G499900.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| TIGR:cd00200 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:690052971..690055780
Molecular Weight (calculated)
38422.6 Da
IEP (calculated)
7.902
GRAVY (calculated)
-0.481
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSAPGNNSL ALAAPRPGME LGNVQQHPNQ AFGLGPGGKQ RSSSLEAPIM LLTGHQSAVY CMKFNPAGTV IASGSHDKDI FLWYVHGECK NYMVLRGHKN
101: AILDLHWTTD GSQIISASPD KTLRVWDVET GKQVKKMAEH SSFVNSCCPS RKWPPLVVSG SDDGTAKLWD LRQRGAIQTL PDKFQITAVS FSEAADKVFT
201: GGLDNDVKWW DLRKNEVTES LKGHQDMITG MQLSPDGSYL LTNAMDNELK IWDLRPYAPE NRNIKTFTGH QHNFEKTLLK CSWSPDNRKV TAGSADRMVY
301: IWDTTSRRIL YKLPGHNGSV NETAFHPTEP IIGSCGSDKQ IYLGEL
101: AILDLHWTTD GSQIISASPD KTLRVWDVET GKQVKKMAEH SSFVNSCCPS RKWPPLVVSG SDDGTAKLWD LRQRGAIQTL PDKFQITAVS FSEAADKVFT
201: GGLDNDVKWW DLRKNEVTES LKGHQDMITG MQLSPDGSYL LTNAMDNELK IWDLRPYAPE NRNIKTFTGH QHNFEKTLLK CSWSPDNRKV TAGSADRMVY
301: IWDTTSRRIL YKLPGHNGSV NETAFHPTEP IIGSCGSDKQ IYLGEL
001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
Arabidopsis Description
At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.