Factsheet for TraesCS1A01G164300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G161300.1	Wheat	cytosol	94.23	95.88
TraesCS1B01G181100.1	Wheat	cytosol	96.07	94.9
HORVU1Hr1G061600.22	Barley	cytosol	88.94	89.16
Os10t0494800-01	Rice	cytosol	68.55	63.77
OQU91573	Sorghum	plastid	63.51	59.15
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	60.32	53.2
TraesCS2A01G592600.1	Wheat	cytosol	43.61	38.38
TraesCS3A01G317500.1	Wheat	cytosol	38.7	37.91
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	22.85	37.13
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	6.88	25.45
TraesCS2A01G196900.1	Wheat	plastid	9.34	22.96
TraesCS4A01G258000.1	Wheat	cytosol	8.6	21.67
TraesCS7A01G499900.1	Wheat	nucleus	8.72	20.52
TraesCS6A01G250200.1	Wheat	cytosol	6.51	17.67
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	8.6	17.63
TraesCS1A01G443600.1	Wheat	cytosol	9.46	16.21
TraesCS3A01G175600.2	Wheat	plastid	9.09	15.48
TraesCS5A01G293600.2	Wheat	nucleus	9.71	11.11

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0008017
GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	HAMAP:MF_03022	PFAM:PF00400
PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845
PANTHER:PTHR19845:SF14	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1A01G164300	EnsemblPlants:TraesCS1A01G164300.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr1A:+:296204792..296210638

Molecular Weight (calculated)

89241.0 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.238

Length

814 amino acids

Sequence
(BLAST)

001: MATKRAYKLQ EFVAHASDVT CAKFGKRTSR TFITGGEDQK VNLWAVGKPS AVLSLSGHTS PVESLSFDSS EVMIGAGAAT GTIKIWDIKE AKVVRTFTGH
101: RSNCASLDSH PFGEFFASGS SDTNMKIWDM RKKRCIHTYQ GHTGRIDVLR FTPDGRWIVS GGADSSVKIW DLTAGKLLHD FTLHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENCRE YYMPASVVRS MTFNSDGKAL FCGLHESLKV LSWEPIICHD AVDVGWSTLA DLNVQEGKLL GCSYNQSCVG
301: IWVVDLMKFD PFTVGSAEAF WNGTGNGPLQ ADNSISSMLG SLSISRRQEA NETSSTLLKR PMSASKEASV PASSAVRKRL SKAPGINNLR LTRAESAPLI
401: SPRVRLKPDS TDHQKRHIAN VRFKVDLSTS ARMIAGNSQA SAAPTYIPRS NIFACSSEGS TFVPGIVPRH VSKVDAGSNL SEAAAAAIKP EQLLKGHLAV
501: DHDKDVHRSI FQSKPITSKT PQRKFIRETS SDGDINCFGA LCTESVQSNK VDNWYDVCGF EETKSAVGRN PQFVNVNRTV VFGSSQLVES SESSIMQNRG
601: TGHLCASYKR SEYAPTSDGL RQSSFAGERS ALANDDDLIA DLMQNHQEFI HAVKSRLTKL ELVYRCWQNN DIKGSVSAMR RMSDHAVTAD IINVLIMEKS
701: TKYITLDICT SVLPLASNLL ESGYDRHLNV ALVTILKLVK SFRASIFSTL SSTPPVSVDL EAEHRLERCS ICFQELEKIN AGLISLTRRE GKVGRSAREL
801: SLLLQDIFKT PSSV

Best Arabidopsis Sequence Match ( AT1G61210.3 )
(BLAST)

0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.