Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G561900.1 | Wheat | cytosol | 98.27 | 98.27 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 96.65 | 97.49 |
| KXG27434 | Sorghum | cytosol | 81.08 | 81.52 |
| Os04t0677700-00 | Rice | cytosol | 77.19 | 80.22 |
| Zm00001d026621_P006 | Maize | cytosol | 78.49 | 79.78 |
| Zm00001d001828_P033 | Maize | cytosol | 79.35 | 79.61 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 34.27 | 67.02 |
| KRG93160 | Soybean | cytosol | 50.05 | 61.0 |
| KRH56498 | Soybean | cytosol | 49.62 | 60.47 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 51.89 | 60.23 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 50.92 | 59.39 |
| Solyc02g021360.2.1 | Tomato | cytosol | 49.41 | 57.27 |
| PGSC0003DMT400065114 | Potato | cytosol | 47.03 | 53.64 |
| Solyc04g008720.2.1 | Tomato | cytosol | 46.7 | 53.33 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 47.03 | 51.97 |
| CDX88026 | Canola | cytosol | 46.49 | 51.87 |
| CDY60225 | Canola | cytosol | 46.27 | 51.26 |
| AT5G08390.1 | Thale cress | cytosol | 46.49 | 51.25 |
| Bra005990.1-P | Field mustard | cytosol | 46.81 | 51.06 |
| CDX81101 | Canola | cytosol | 46.38 | 51.01 |
| CDX80363 | Canola | cytosol | 46.16 | 50.24 |
| Bra009683.1-P | Field mustard | cytosol | 46.05 | 47.02 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 51.46 | 45.42 |
| TraesCS1A01G164300.1 | Wheat | cytosol | 38.38 | 43.61 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 36.97 | 41.16 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 6.38 | 26.82 |
| TraesCS2A01G196900.1 | Wheat | plastid | 8.0 | 22.36 |
| TraesCS4A01G258000.1 | Wheat | cytosol | 7.68 | 21.98 |
| TraesCS7A01G499900.1 | Wheat | nucleus | 8.22 | 21.97 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 7.89 | 18.39 |
| TraesCS6A01G250200.1 | Wheat | cytosol | 5.95 | 18.33 |
| TraesCS1A01G443600.1 | Wheat | cytosol | 8.86 | 17.26 |
| TraesCS3A01G175600.2 | Wheat | plastid | 8.0 | 15.48 |
| TraesCS5A01G293600.2 | Wheat | nucleus | 9.62 | 12.52 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 |
| PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS2A01G592600 | EnsemblPlants:TraesCS2A01G592600.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:779665988..779673598
Molecular Weight (calculated)
100550.0 Da
IEP (calculated)
8.336
GRAVY (calculated)
-0.433
Length
925 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSISSLPGH TSAVESVAFD STEVFVAAGA ASGTVKLWDL EEAKIVRTLT
101: GHRSNCMSVD FHPFGEFFAS GSLDTNLKIW DIRRKGCIHT YKGHTRGVNA IRFTPDGRWV VSGGEDSAVK IWDLTAGKLL HEFKSHEGQI QCIDFHPHEF
201: LLATGSADKT VKFWDLETFE LIGSTGPEMT GVRSMTFNPD GRSLLCGLHE SLKVFSWEPI RCHDTVDVGW SRLSDLNVHE GKLLGCSSNQ SCVGIWVVDL
301: TRLEPHATTT SALLNGRSEL KTSSGGTMPL QNDSGSRANI GRSSALQNSE NNLKASTGRL SVSQNSDSAP KEIKPTAPSG LVPSTPQRVG TGSSTRTAGN
401: STYASGGTTL KRSSLKSNST SNLHNFSKTD VVPAAVIIPR TSSGAELGTG SRSYAADVAP VLSKASRRAE PATDPRTESA DVAPAVVPRT SSRMEMASDS
501: APDAVSRVGR RLESAADSRK ESADAAPVVP RATSRMEMAS DSVPVLPKAG RRFESATDSR KESTDEAPVV VPRATSRMEM ASDSRREPSA GRVSPFRIQS
601: RYAEPRKSTN VKVDMDKVDV GSKDTESDDL TCQIFLPRRN GAVQTVIPEE TREDVKHGSV YRSGFSGSAE SNTSHRNDNY VPRMRKPRDN CYIEVSRAGR
701: TRSIVSNWEG RDQSPSHEEP TTSNSALGAP RGRIYSSRGS SQAAETNIVT SEEDVLSVLI EEHDLFLSST RSRLTKLQIL HQMWQRNDIR GVFSALEKMS
801: DHAVCADMAS VLMEKSEAIT LDLCTTILPV LADLLESKTD RHVAVSLELV VKLVRTFGPV IHSTVSVGPS SVGVDLEAEQ RRERCNLCFI ELEKVKNKLP
901: SLMRRKGAAS NTAQELSLVF QEIMS
101: GHRSNCMSVD FHPFGEFFAS GSLDTNLKIW DIRRKGCIHT YKGHTRGVNA IRFTPDGRWV VSGGEDSAVK IWDLTAGKLL HEFKSHEGQI QCIDFHPHEF
201: LLATGSADKT VKFWDLETFE LIGSTGPEMT GVRSMTFNPD GRSLLCGLHE SLKVFSWEPI RCHDTVDVGW SRLSDLNVHE GKLLGCSSNQ SCVGIWVVDL
301: TRLEPHATTT SALLNGRSEL KTSSGGTMPL QNDSGSRANI GRSSALQNSE NNLKASTGRL SVSQNSDSAP KEIKPTAPSG LVPSTPQRVG TGSSTRTAGN
401: STYASGGTTL KRSSLKSNST SNLHNFSKTD VVPAAVIIPR TSSGAELGTG SRSYAADVAP VLSKASRRAE PATDPRTESA DVAPAVVPRT SSRMEMASDS
501: APDAVSRVGR RLESAADSRK ESADAAPVVP RATSRMEMAS DSVPVLPKAG RRFESATDSR KESTDEAPVV VPRATSRMEM ASDSRREPSA GRVSPFRIQS
601: RYAEPRKSTN VKVDMDKVDV GSKDTESDDL TCQIFLPRRN GAVQTVIPEE TREDVKHGSV YRSGFSGSAE SNTSHRNDNY VPRMRKPRDN CYIEVSRAGR
701: TRSIVSNWEG RDQSPSHEEP TTSNSALGAP RGRIYSSRGS SQAAETNIVT SEEDVLSVLI EEHDLFLSST RSRLTKLQIL HQMWQRNDIR GVFSALEKMS
801: DHAVCADMAS VLMEKSEAIT LDLCTTILPV LADLLESKTD RHVAVSLELV VKLVRTFGPV IHSTVSVGPS SVGVDLEAEQ RRERCNLCFI ELEKVKNKLP
901: SLMRRKGAAS NTAQELSLVF QEIMS
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.