Factsheet for TraesCS4A01G258000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G056800.1	Wheat	cytosol	99.07	100.0
TraesCS4B01G056500.1	Wheat	cytosol	99.07	99.07
HORVU4Hr1G009500.1	Barley	cytosol, plastid	98.45	91.64
Zm00001d033849_P002	Maize	extracellular, nucleus	88.85	89.97
OQU91075	Sorghum	cytosol	88.24	89.34
Os03t0725400-02	Rice	cytosol	87.0	86.73
GSMUA_Achr2P08580_001	Banana	cytosol	68.11	77.46
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	74.61	71.51
VIT_07s0205g00150.t01	Wine grape	cytosol	65.63	67.73
PGSC0003DMT400078695	Potato	cytosol	65.02	66.88
Solyc02g091790.2.1	Tomato	cytosol, nucleus	64.71	66.56
KRH50874	Soybean	nucleus	67.18	65.96
KRH02239	Soybean	nucleus	65.33	63.75
AT3G49660.1	Thale cress	cytosol	62.54	63.72
CDX86957	Canola	cytosol	57.89	59.94
CDY00226	Canola	cytosol, nucleus, plastid	58.2	59.68
Bra019610.1-P	Field mustard	plastid	58.2	59.31
TraesCS2A01G196900.1	Wheat	plastid	57.59	56.19
TraesCS6A01G250200.1	Wheat	cytosol	26.32	28.33
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	18.58	27.27
TraesCS7A01G499900.1	Wheat	nucleus	28.48	26.59
TraesCS1A01G443600.1	Wheat	cytosol	32.82	22.32
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	26.63	21.66
TraesCS3A01G175600.2	Wheat	plastid	23.53	15.9
TraesCS5A01G293600.2	Wheat	nucleus	22.6	10.27
TraesCS1A01G164300.1	Wheat	cytosol	21.67	8.6
TraesCS3A01G317500.1	Wheat	cytosol	21.67	8.42
TraesCS2A01G592600.1	Wheat	cytosol	21.98	7.68

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0010228	GO:GO:0042393	GO:GO:0048188
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS4A01G258000	EnsemblPlants:TraesCS4A01G258000.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	:	:	:

Description

No Description!

Coordinates

chr4A:-:570973087..570978939

Molecular Weight (calculated)

34787.9 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.176

Length

323 amino acids

Sequence
(BLAST)

001: MAAPDADETP ASPGYALRAT LAGHRRAVSA VKFSPDGRLL ASASADKLLR VWSSADLSLV AELEGHEEGV SDLSFSPDGR LLASASDDRT VRIWDLGAGG
101: GARLVKTLAG HTNYAFCVAF SPHGNVLASG SFDETVRVWE VRSGRSLRVL PAHSEPVTAV DFDRDGAMIV SGSYDGLCRI WDAATGHCVK TLIDDESPPV
201: SYSKFSPNGK FVLASTLDST LRLWNFSAGK FLKTYTGHVN TKYCIPAAFS ITNGKYIVSG SEDKCVYMWD LQSRKIVQKL EGHSDTVIAV SCHPKENMIA
301: SGALDNDKTV KVWVQKDGDQ REA

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.