Factsheet for TraesCS2A01G126700.2

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	97.73	97.98
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	47.1	85.0
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	97.98	80.21
Os03t0685600-01	Rice	cytosol	79.6	80.2
HORVU2Hr1G022250.4	Barley	mitochondrion	96.47	77.22
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	77.33	77.14
Zm00001d041945_P003	Maize	cytosol	76.07	71.06
GSMUA_Achr11P...	Banana	cytosol	53.15	61.16
Zm00001d011779_P005	Maize	cytosol	74.31	60.2
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	59.45	59.45
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	59.19	59.19
VIT_18s0164g00020.t01	Wine grape	nucleus	57.43	58.31
VIT_11s0016g02220.t01	Wine grape	cytosol	56.68	57.25
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	53.4	54.22
AT1G71840.1	Thale cress	nucleus	52.14	50.86
CDX68298	Canola	cytosol	49.37	50.39
CDX72834	Canola	cytosol	50.13	50.0
CDY36678	Canola	cytosol	48.87	49.87
CDX96351	Canola	cytosol	49.62	49.37
Bra003910.1-P	Field mustard	cytosol	46.85	49.21
Bra016111.1-P	Field mustard	cytosol	49.37	49.12
KRH37298	Soybean	cytosol	46.6	48.81
KRH35009	Soybean	cytosol	16.37	47.1
TraesCS4A01G258000.1	Wheat	cytosol	21.66	26.63
TraesCS2A01G196900.1	Wheat	plastid	19.14	22.96
TraesCS7A01G499900.1	Wheat	nucleus	19.9	22.83
TraesCS6A01G250200.1	Wheat	cytosol	14.61	19.33
TraesCS1A01G443600.1	Wheat	cytosol	22.92	19.16
TraesCS3A01G175600.2	Wheat	plastid	18.64	15.48
TraesCS5A01G293600.2	Wheat	nucleus	17.63	9.85
TraesCS3A01G317500.1	Wheat	cytosol	19.14	9.15
TraesCS1A01G164300.1	Wheat	cytosol	17.63	8.6
TraesCS2A01G592600.1	Wheat	cytosol	18.39	7.89

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS2A01G126700	EnsemblPlants:TraesCS2A01G126700.2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:74788431..74791865

Molecular Weight (calculated)

43015.2 Da

IEP (calculated)

4.131

GRAVY (calculated)

-0.278

Length

397 amino acids

Sequence
(BLAST)

001: MSISGEVPDE GSDGEEVFID EQDIIQEIHL DEEDLPDHDD DDEDDEEDQE MDEVEDHSAY AFHGHTDEVF AAACSPVDAS LVVSGGKDDR GFLWRIGSEQ
101: DFQELTGHGD TVCTVAFSSD GKLVACGSMD GQINVWDTAT RTLQGTLEGS SGSGFEWLRW HPRGHLIIAG SEDCNVWMWN ADHNAFLNTF AGHSSTVTCG
201: DFTPDGKLIC SGSDDATLRI WDPKSAQCRH VVRGHGYHTQ GLTCLAITPD SQSIVSGSED NSVHIVSINS GQVVGSLVGH TNSIECIGIS SRYNWVATGS
301: IDRTLIIWDL ARQAIRSTCE HDEGVTCLAW LGSSRYVASG CIDGMVRIWD SLSGDLARTF SGHRDVVQSL AVSADGNSIV SVSTDKSARV FDISMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.