Factsheet for Bra003910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68298	Canola	cytosol	98.68	95.89
Bra016111.1-P	Field mustard	cytosol	88.62	83.96
AT1G71840.1	Thale cress	nucleus	87.57	81.33
VIT_18s0164g00020.t01	Wine grape	nucleus	65.34	63.17
VIT_11s0016g02220.t01	Wine grape	cytosol	64.81	62.34
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	61.9	58.94
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	61.38	58.44
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	58.47	56.52
GSMUA_Achr11P...	Banana	cytosol	50.0	54.78
KRH37298	Soybean	cytosol	53.17	53.03
KRH35009	Soybean	cytosol	18.25	50.0
Os03t0685600-01	Rice	cytosol	50.79	48.73
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	28.04	48.18
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	50.53	47.99
TraesCS1D01G363000.1	Wheat	cytosol	49.74	47.72
TraesCS1B01G374800.1	Wheat	cytosol	49.21	47.21
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	49.21	46.85
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	48.94	46.72
HORVU3Hr1G013230.4	Barley	cytosol	48.41	45.75
Zm00001d041945_P003	Maize	cytosol	48.68	43.29
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	48.68	37.94
Zm00001d011779_P005	Maize	cytosol	48.68	37.55
HORVU2Hr1G022250.4	Barley	mitochondrion	49.21	37.5
Bra019610.1-P	Field mustard	plastid	19.31	23.03
Bra018529.1-P	Field mustard	cytosol	19.31	22.39
HORVU5Hr1G075920.16	Barley	nucleus	38.1	19.59
Bra024323.1-P	Field mustard	cytosol	14.29	18.18
Bra003387.1-P	Field mustard	cytosol	15.08	16.96
Bra022611.1-P	Field mustard	cytosol	19.05	15.13
Bra009201.1-P	Field mustard	nucleus	19.05	15.0
Bra004783.1-P	Field mustard	cytosol, golgi	15.87	14.46
Bra003111.1-P	Field mustard	nucleus	8.73	14.22
Bra037932.1-P	Field mustard	mitochondrion	18.52	12.17
Bra012753.1-P	Field mustard	cytosol	15.08	11.85
Bra007287.1-P	Field mustard	cytosol	11.9	11.25
Bra021188.1-P	Field mustard	cytosol	14.02	10.66
Bra023416.1-P	Field mustard	nucleus	16.93	9.89
Bra006202.1-P	Field mustard	nucleus	16.93	9.67
Bra005990.1-P	Field mustard	cytosol	16.67	7.43
Bra009683.1-P	Field mustard	cytosol	17.72	7.4
Bra031445.1-P	Field mustard	cytosol	16.67	5.61

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra003910	EnsemblPlants:Bra003910.1	EnsemblPlants:Bra003910.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4CI77
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI0002541824	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:	:

Description

AT1G71840 (E=1e-093) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:-:15698973..15700781

Molecular Weight (calculated)

40633.6 Da

IEP (calculated)

4.079

GRAVY (calculated)

-0.261

Length

378 amino acids

Sequence
(BLAST)

001: MSNRDMNNPA MEEEDEGDVF LGESDVLHEI DVDGEDLPDA FDEDDNDNDN EDEVFDENDD SVHTFTGHKG ELYALACSPL DPTLVATGGG DDKAFLWKIG
101: NGDWAAELPA HKDSVSSLAF SYDGQLLASG GLDGVVQIFD ASSGALKCVL DGPGSGIEWV KWHPRGHIVL AGSEDCSLWM WNADKEAYLN MFSGHNQSVT
201: CGDFTPDGHP YHTEGLICLD INSNSSLAIS GSKDGSVHIV NIVTGKVVSS LSSHTESVEC VKFSPSSATI PMAATGGMDK KLVIWDLQHS TPRFICEHAE
301: GVTCVSWIGT SKYLATGCGD GTVSVWDSLL GNCVHTYHGH QDAVQSISVS ANTEFIVSVS VDHTARVYDT SEFQNKME

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.