Factsheet for VIT_18s0164g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02220.t01	Wine grape	cytosol	90.28	89.82
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	70.33	69.27
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	69.82	68.77
GSMUA_Achr11P...	Banana	cytosol	59.59	67.54
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	66.24	66.24
CDX68298	Canola	cytosol	65.22	65.55
Bra003910.1-P	Field mustard	cytosol	63.17	65.34
CDY36678	Canola	cytosol	64.96	65.3
AT1G71840.1	Thale cress	nucleus	67.26	64.62
CDX72834	Canola	cytosol	65.73	64.57
Bra016111.1-P	Field mustard	cytosol	64.96	63.66
CDX96351	Canola	cytosol	64.19	62.91
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	60.61	59.55
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	32.99	58.64
KRH37298	Soybean	cytosol	56.27	58.05
KRH35009	Soybean	cytosol	20.46	57.97
Os03t0685600-01	Rice	cytosol	58.31	57.87
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	58.31	57.43
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	57.29	56.57
Zm00001d041945_P003	Maize	cytosol	58.06	53.41
TraesCS1B01G374800.1	Wheat	cytosol	53.45	53.05
TraesCS1D01G363000.1	Wheat	cytosol	52.94	52.54
HORVU3Hr1G013230.4	Barley	cytosol	52.94	51.75
Zm00001d011779_P005	Maize	cytosol	58.82	46.94
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	57.8	46.6
HORVU2Hr1G022250.4	Barley	mitochondrion	57.54	45.36
VIT_07s0151g00960.t01	Wine grape	cytosol	20.46	25.4
VIT_07s0205g00150.t01	Wine grape	cytosol	19.18	23.96
VIT_05s0094g00800.t01	Wine grape	cytosol	19.69	22.38
HORVU5Hr1G075920.16	Barley	nucleus	41.43	22.04
VIT_09s0002g01580.t01	Wine grape	cytosol	15.6	20.4
VIT_13s0064g00360.t01	Wine grape	nucleus	20.2	16.56
VIT_05s0077g02310.t01	Wine grape	cytosol	20.46	16.53
VIT_13s0064g00330.t01	Wine grape	extracellular	5.37	16.03
VIT_17s0000g09750.t01	Wine grape	cytosol	19.95	15.06
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	16.11	12.09
VIT_10s0071g01150.t01	Wine grape	cytosol	18.67	9.16
VIT_13s0019g00220.t01	Wine grape	nucleus	17.9	9.06
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	3.84	5.08
VIT_00s1397g00010.t01	Wine grape	cytosol	3.32	3.83

Protein Annotations

EntrezGene:100256222	wikigene:100256222	Gene3D:2.130.10.10	MapMan:35.1	EMBL:AM441735	ProteinID:CAN60774
ProteinID:CAN60774.1	ProteinID:CBI35322	ProteinID:CBI35322.3	UniProt:D7TXU7	EMBL:FN596259	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0030687
GO:GO:0042273	GO:GO:0051082	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100256222
wikigene:LOC100256222	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC58302
UniParc:UPI00015CCBBE	ArrayExpress:VIT_18s0164g00020	EnsemblPlantsGene:VIT_18s0164g00020	EnsemblPlants:VIT_18s0164g00020.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002274841	RefSeq:XP_002274841.1	RefSeq:XP_019072285.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:18137013..18146891

Molecular Weight (calculated)

41989.0 Da

IEP (calculated)

4.070

GRAVY (calculated)

-0.280

Length

391 amino acids

Sequence
(BLAST)

001: MNDPAHHDED EDQGDVFIDE NDVVQEITVD DEDLPDVEGE DDDAEDFEEA DDSMHIFTGH TGELYTVACS PMDARLVATG GGDDKGFIWK IFDGDWAFEL
101: GGHKDSVCSL DFSADGQLLA SGSFDGFVKI WDASSGDLKG TLEGPGGGIE WVRWHPRGHL VLAGSEDCTV WMWNADRSAY LNMFSGHASS VTCGNFTPDG
201: KTICTGSDDA TLRIWNPRSG ENTHVVRGHP YHTEGLTCLA ITSDSTLALT GSKDSSVHIV NIATGKVVSS LTSHTDSIEC IGLSLSSPWA ATGGMDNKLV
301: VWDLQHSSPR CTCDNEDGVT CLSWLGDSKY VAAGCVDGKI RIWDSLSGDC VRTFSGHSDA IQSLGVSADK NFLVSGSLDG TARVFEIPEF Q

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.