Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 97.98 | 97.73 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 82.83 | 83.25 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 97.98 | 80.0 |
| Os03t0685600-01 | Rice | cytosol | 79.55 | 79.95 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 96.46 | 77.02 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 77.27 | 76.88 |
| Zm00001d041945_P003 | Maize | cytosol | 75.51 | 70.35 |
| GSMUA_Achr11P... | Banana | cytosol | 53.54 | 61.45 |
| Zm00001d011779_P005 | Maize | cytosol | 73.99 | 59.8 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 58.59 | 58.44 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 58.33 | 58.19 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 56.57 | 57.29 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 55.81 | 56.23 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 53.54 | 54.22 |
| AT1G71840.1 | Thale cress | nucleus | 52.27 | 50.86 |
| CDX68298 | Canola | cytosol | 49.24 | 50.13 |
| CDX72834 | Canola | cytosol | 50.25 | 50.0 |
| CDY36678 | Canola | cytosol | 48.74 | 49.61 |
| CDX96351 | Canola | cytosol | 49.75 | 49.37 |
| Bra016111.1-P | Field mustard | cytosol | 49.49 | 49.12 |
| KRH37298 | Soybean | cytosol | 46.97 | 49.08 |
| Bra003910.1-P | Field mustard | cytosol | 46.72 | 48.94 |
| KRH35009 | Soybean | cytosol | 16.67 | 47.83 |
| TraesCS4D01G056800.1 | Wheat | cytosol | 21.97 | 27.19 |
| TraesCS7D01G486800.1 | Wheat | cytosol, plastid | 19.95 | 22.83 |
| TraesCS2D01G204900.1 | Wheat | cytosol, plastid | 19.19 | 21.05 |
| TraesCS6D01G232000.1 | Wheat | cytosol | 14.65 | 19.33 |
| TraesCS1D01G451700.1 | Wheat | cytosol | 22.22 | 18.53 |
| TraesCS3D01G181100.1 | Wheat | cytosol | 18.18 | 15.03 |
| TraesCS5D01G394200.1 | Wheat | cytosol | 16.41 | 12.6 |
| TraesCS5D01G300900.1 | Wheat | nucleus | 17.68 | 9.82 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 18.94 | 9.06 |
| TraesCS1D01G161300.1 | Wheat | cytosol | 17.42 | 8.62 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 18.43 | 7.89 |
| TraesCS1D01G151100.1 | Wheat | cytosol | 6.31 | 3.94 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19857 | PANTHER:PTHR19857:SF8 | InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 |
| SUPFAM:SSF50998 | EnsemblPlantsGene:TraesCS2D01G129200 | EnsemblPlants:TraesCS2D01G129200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | TIGR:cd00200 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:-:75001623..75006080
Molecular Weight (calculated)
42816.9 Da
IEP (calculated)
4.153
GRAVY (calculated)
-0.273
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISGEVPDE GSDGEEVFID EQDIIQEIHL DEEDLPDHDD DDDDEEDQEM DEVEDHSTYA FHGHTDEVFA AACSPTDASL VVSGGKDDRG FLWRIGSAQD
101: FQELTGHGDT VCTVAFSSDG KLVACGSMDG QINVWNTATR TLQGTLEGSS GSGFEWLRWH PRGNLIIAGS EDCNVWMWNA DHNAFLNTFA GHSSTVTCGD
201: FTPDGKLICS GSDDATLRIW EPKSAQCRHV VRGHGYHTQG LTCLAITPDS QSIVSGSEDN SVHIVSINSG QVVGSLVGHT NSIECIGISS RYNWVATGSI
301: DRTLIIWDLA RQAIRSTCEH DEGVTCLAWL GSSRYVASGC IDGMVRIWDS LSGDLAHTFS GHRDVVQSLA VSADGNSIVS VSTDKSARVF DVSMFK
101: FQELTGHGDT VCTVAFSSDG KLVACGSMDG QINVWNTATR TLQGTLEGSS GSGFEWLRWH PRGNLIIAGS EDCNVWMWNA DHNAFLNTFA GHSSTVTCGD
201: FTPDGKLICS GSDDATLRIW EPKSAQCRHV VRGHGYHTQG LTCLAITPDS QSIVSGSEDN SVHIVSINSG QVVGSLVGHT NSIECIGISS RYNWVATGSI
301: DRTLIIWDLA RQAIRSTCEH DEGVTCLAWL GSSRYVASGC IDGMVRIWDS LSGDLAHTFS GHRDVVQSLA VSADGNSIVS VSTDKSARVF DVSMFK
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.