Factsheet for TraesCS2D01G204900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytoskeleton, cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G196900.1	Wheat	plastid	90.3	98.49
TraesCS2B01G224500.1	Wheat	plastid	90.3	98.19
HORVU2Hr1G041020.2	Barley	cytosol, plastid	91.69	91.94
KXG36525	Sorghum	plastid	78.39	86.02
Zm00001d021868_P001	Maize	plastid	77.56	85.37
Os07t0572000-01	Rice	plastid	79.78	85.21
Zm00001d021866_P001	Maize	plastid	77.29	85.06
GSMUA_Achr7P01850_001	Banana	plastid	44.04	67.95
Solyc09g065290.2.1	Tomato	cytosol, plastid	57.62	66.03
VIT_07s0151g00960.t01	Wine grape	cytosol	57.34	65.71
PGSC0003DMT400049837	Potato	cytosol, plastid	56.79	65.08
CDX91316	Canola	cytosol	55.12	61.04
Bra018529.1-P	Field mustard	cytosol	54.85	60.74
CDX97287	Canola	cytosol	54.85	60.74
KRH71413	Soybean	nucleus	53.74	60.62
KRH32024	Soybean	cytosol	53.46	60.5
AT4G02730.1	Thale cress	cytosol	55.68	60.36
TraesCS4D01G056800.1	Wheat	cytosol	51.8	58.44
CDX70436	Canola	plastid	22.44	48.5
TraesCS6D01G232000.1	Wheat	cytosol	23.82	28.67
TraesCS7D01G486800.1	Wheat	cytosol, plastid	23.55	24.57
TraesCS1D01G451700.1	Wheat	cytosol	27.15	20.63
TraesCS1D01G363000.1	Wheat	cytosol	21.33	19.54
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	21.05	19.19
TraesCS3D01G181100.1	Wheat	cytosol	20.22	15.24
TraesCS5D01G394200.1	Wheat	cytosol	19.67	13.76
TraesCS5D01G300900.1	Wheat	nucleus	22.99	11.64
TraesCS1D01G161300.1	Wheat	cytosol	21.61	9.75
TraesCS3D01G313800.1	Wheat	cytosol	20.22	8.82
TraesCS2D01G561900.1	Wheat	cytosol	21.05	8.22
TraesCS1D01G151100.1	Wheat	cytosol	6.09	3.46

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS2D01G204900	EnsemblPlants:TraesCS2D01G204900.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:156824830..156827982

Molecular Weight (calculated)

39055.2 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.186

Length

361 amino acids

Sequence
(BLAST)

001: MAEGQTVTCH STWDRASGLR HFPPFPIPPT MSSATQQQPP PAAPPYRPYR QVRAATPHAR AISCVRFSPC GRLLATASLD GTVALLSPSS LAVIANLRGH
101: TQGVSDLSWS TDSNYLCSAS DDRTLRIWDI RSILSGPKPA DPNADRCIRV LKGHANFVFS ANFNPQTSSQ VASGGFDCTV RIWDVSSGRC IRTIDAHSEP
201: VTSVHFIRDG SIIVSGSHDG SCKIWDAGTG SCLKTVIDDK KPAVSCSMFS PNGKFILVAT LDDSLKLCNY ATGKFLKVYS GHVNRVYCIQ SAFSVTNGKY
301: IVSGSEDKCV YIWDLQGKNI LQKMEGHSDA VISVSCHPTE NKIASGSLDN DKTVRLWVQD G

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.