Factsheet for HORVU2Hr1G041020.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G196900.1	Wheat	plastid	90.0	97.89
TraesCS2B01G224500.1	Wheat	plastid	89.44	96.99
TraesCS2D01G204900.1	Wheat	cytosol, plastid	91.94	91.69
KXG36525	Sorghum	plastid	78.89	86.32
Zm00001d021868_P001	Maize	plastid	77.5	85.06
Zm00001d021866_P001	Maize	plastid	77.22	84.76
Os07t0572000-01	Rice	plastid	79.17	84.32
GSMUA_Achr7P01850_001	Banana	plastid	43.61	67.09
Solyc09g065290.2.1	Tomato	cytosol, plastid	57.78	66.03
VIT_07s0151g00960.t01	Wine grape	cytosol	56.94	65.08
PGSC0003DMT400049837	Potato	cytosol, plastid	56.94	65.08
CDX91316	Canola	cytosol	55.0	60.74
Bra018529.1-P	Field mustard	cytosol	54.72	60.43
CDX97287	Canola	cytosol	54.72	60.43
KRH71413	Soybean	nucleus	53.61	60.31
AT4G02730.1	Thale cress	cytosol	55.56	60.06
KRH32024	Soybean	cytosol	53.06	59.87
HORVU4Hr1G009500.1	Barley	cytosol, plastid	51.67	53.6
CDX70436	Canola	plastid	22.22	47.9
HORVU6Hr1G063000.1	Barley	cytosol	23.61	26.73
HORVU7Hr1G111780.2	Barley	cytosol, plastid	23.61	24.57
HORVU0Hr1G027010.1	Barley	plastid	23.61	23.68
HORVU1Hr1G095080.1	Barley	cytosol, plastid	26.94	19.28
HORVU3Hr1G013230.4	Barley	cytosol	20.83	18.75
HORVU2Hr1G022250.4	Barley	mitochondrion	20.56	14.92
HORVU3Hr1G035450.7	Barley	mitochondrion	20.56	14.45
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	19.72	13.79
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	23.33	11.16
HORVU5Hr1G075920.16	Barley	nucleus	18.89	9.25
HORVU1Hr1G061600.22	Barley	cytosol	20.56	9.11
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	20.0	7.46

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	UniProt:A0A287HSW6	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU2Hr1G041020	EnsemblPlants:HORVU2Hr1G041020.2	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847
PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B467613	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:-:200492269..200495577

Molecular Weight (calculated)

38816.1 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.146

Length

360 amino acids

Sequence
(BLAST)

001: TKLSLATPLG TEAQSIGSLP SPPFQIPPTM SSATTQQPPP AAPPYRPYRQ VRAATPHARA ISCVRFSPCG RVLATASLDG TVALLSPSSL AVIANLRGHT
101: QGVSDLSWST DLNYLCSASD DRTLRIWDIR SILPGPKPAD PNADRCIRVL KGHTNFVFSA NFNPQTSSQV ASGGFDCTVR IWDVSNGRCI RAIDAHSEPV
201: TSVHFIRDGS IIVSGSHDGS CKIWDARTGS CLKTVIDDKK PAVSCSMFSP NGKFILVATL DDSLKLCNYA TGKFLKVYSG HVNRVYCIQS AFSVTNGKYI
301: VSGSEDKCIY IWDLQGKNIL QKMEGHTDAV ISVSCHPTEN KIASGSLDND KTVRLWVQDG

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.