CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021866_P001	Maize	plastid	96.05	96.34
Zm00001d021868_P001	Maize	plastid	95.74	96.04
Os07t0572000-01	Rice	plastid	89.06	86.69
TraesCS2A01G196900.1	Wheat	plastid	86.63	86.1
TraesCS2B01G224500.1	Wheat	plastid	86.32	85.54
HORVU2Hr1G041020.2	Barley	cytosol, plastid	86.32	78.89
TraesCS2D01G204900.1	Wheat	cytosol, plastid	86.02	78.39
GSMUA_Achr7P01850_001	Banana	plastid	47.72	67.09
Solyc09g065290.2.1	Tomato	cytosol, plastid	64.13	66.98
PGSC0003DMT400049837	Potato	cytosol, plastid	63.53	66.35
VIT_07s0151g00960.t01	Wine grape	cytosol	62.01	64.76
CDX91316	Canola	cytosol	60.49	61.04
KRH32024	Soybean	cytosol	58.97	60.81
Bra018529.1-P	Field mustard	cytosol	60.18	60.74
CDX97287	Canola	cytosol	60.18	60.74
KRH71413	Soybean	nucleus	58.97	60.62
AT4G02730.1	Thale cress	cytosol	61.09	60.36
OQU91075	Sorghum	cytosol	56.84	58.62
CDX70436	Canola	plastid	24.62	48.5
EES05216	Sorghum	cytosol	23.4	25.41
EER90141	Sorghum	plastid	26.14	25.07
EES18812	Sorghum	cytosol	29.79	20.46
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	21.28	17.59
KXG25821	Sorghum	cytosol	21.28	14.61
KXG37566	Sorghum	plastid	21.88	12.52
EES04226	Sorghum	nucleus	23.71	10.92
OQU87670	Sorghum	cytosol	20.67	8.17
OQU91573	Sorghum	plastid	21.58	8.12
KXG27434	Sorghum	cytosol	21.28	7.61

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	UniProt:A0A1B6QF28	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG36525	ProteinID:KXG36525
ProteinID:KXG36525.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	EnsemblPlantsGene:SORBI_3002G347000	SUPFAM:SSF50978	UniParc:UPI00022070D2
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:71262619..71265634

Molecular Weight (calculated)

35680.2 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.139

Length

329 amino acids

Sequence
(BLAST)

001: MSQPPAPAPP YRPYRQVREA TPHSRAVSCV RFSPCGRLLA TASLDGTVAL LSPSSLSVIA VLRGHSDGVS DLSWSTESYY LCSASDDRTI RIWDIRPVLA
101: GGAQAAAADP GADRCIRVLK GHTNFVFSAN FNPQTSSQIA SGGFDCTVRI WDVKNGRCTR AIEAHSEPVT SVHFIRDGSI VVSGSHDGSC KIWDAKTGAC
201: LKTVIDEKKP AVSFSMFSPN GKFILVAMLD NSLKLCNFAT GKFLKVYSGH VNRQYCIQSA FSVTNGKYIV SGSEDNCVYI WDLQGRNILQ KLEGHTDTVI
301: SVSCHPTENK IASGGLDNDR TVRLWVQDS

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.