CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	96.64	96.1
TraesCS5A01G293600.2	Wheat	nucleus	81.79	82.14
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	32.49	81.98
TraesCS5D01G300900.1	Wheat	nucleus	81.79	81.91
TraesCS5B01G292800.1	Wheat	nucleus	81.79	81.91
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	84.17	79.81
GSMUA_Achr4P29380_001	Banana	nucleus	69.19	69.48
KRH13395	Soybean	nucleus	65.55	65.55
Bra006202.1-P	Field mustard	nucleus	60.5	65.26
AT5G13480.2	Thale cress	nucleus	59.8	64.99
KRH20750	Soybean	nucleus	64.85	64.66
Bra023416.1-P	Field mustard	nucleus	58.4	64.45
VIT_13s0019g00220.t01	Wine grape	nucleus	68.49	63.26
Solyc08g067040.2.1	Tomato	nucleus	65.41	61.13
CDY01533	Canola	plastid	11.62	52.53
KXG36525	Sorghum	plastid	10.92	23.71
OQU91075	Sorghum	cytosol	10.08	22.57
EES05216	Sorghum	cytosol	9.52	22.44
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	10.36	18.59
EER90141	Sorghum	plastid	8.54	17.78
EES18812	Sorghum	cytosol	11.48	17.12
KXG25821	Sorghum	cytosol	10.36	15.45
KXG37566	Sorghum	plastid	9.1	11.3
OQU87670	Sorghum	cytosol	12.18	10.46
KXG27434	Sorghum	cytosol	13.03	10.11
OQU91573	Sorghum	plastid	11.9	9.73

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	EntrezGene:8077357	UniProt:C5XHW5	EnsemblPlants:EES04226	ProteinID:EES04226
ProteinID:EES04226.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005847	GO:GO:0006139
GO:GO:0006378	GO:GO:0006379	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22836	SMART:SM00320	EnsemblPlantsGene:SORBI_3003G427100	SUPFAM:SSF50978	unigene:Sbi.10475
UniParc:UPI0001A8573A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002459106.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:73053364..73060285

Molecular Weight (calculated)

78363.8 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.691

Length

714 amino acids

Sequence
(BLAST)

001: MMQQQQQQLP PPPQHPPPQA GGGGGDFYRG PPMRQLSAAS STNLPPDYAA HPGPPPQQQH QPPYDAYGDS FGAKRMRKPV QRRTVDYTSS IVRHVQARMW
101: QRDARDRFTL QPTPAAVLDM LPSVAYPDNP STSFAAKFVH SSINKNRCSI NRVLWTTTGR RLITGSQSGE FTLWNGQSFN FEMILQAHDL PVRSMVWSHN
201: ENWMVTGDDG GAIKYWQSNM NNVKVNKTAH GESVRGLSFS RTDLKFCSCS DDRTVKVWDF ARCQEEKSLT GHGWDVKTVD WHPTKSLLVS GGKDYLVKLW
301: DAKSGRELSS FHGHKNIVHC VKWNQNGNWV LTASKDQIIK LYDIRSMKEL QSFRGHTKDV TALAWHPFHE EYFVSGSFDG AIFHWLVGHE APQVEISNAH
401: DSSVWDLSWH PVGYLLCSGG NDHATKFWCR NRPGDLTRDR YNSGQMQGYG DQQPFGARGM GGFQMPEPPI TPGPFAPGLS RTEGTIPGIG VAMTLAGQSL
501: DGSDGEQRPS IPGLPPGQPP LPPGPHPSLL GQQQQYQQMP QQQHPQFSRP PPTNMPQLQP PAHMLSHSQG SRPTLPQLPP MGGPSVPSQV NPPLPPMPHP
601: TAMQGSQSQM MPQMPQHMMG LNQMHPGSVP PGTVPPMGGF PSGMGNIQGA SGSSGIQNFP MGGMYNRPQG QMAPQGQMTS IPGLSSYQGM GNVGLTPPPP
701: PPQHPPPRGG SAHQ

Best Arabidopsis Sequence Match ( AT5G13480.1 )
(BLAST)

001: MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV
101: AYSDNPSTSF AAKFVHASLN KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM VSGDDGGTLK YWQNNMNNVK
201: ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN
301: QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT
401: TKFWCRNRPA DNPRDVLMQN QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP GSMALGAPPL PPGPHPSLLG
501: SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS
601: GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.