CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	86.5	81.91
Os10t0494800-01	Rice	cytosol	66.82	66.74
TraesCS1D01G161300.1	Wheat	cytosol	59.5	65.0
HORVU1Hr1G061600.22	Barley	cytosol	59.5	64.04
TraesCS1A01G164300.1	Wheat	cytosol	59.15	63.51
TraesCS1B01G181100.1	Wheat	cytosol	59.27	62.86
TraesCS1D01G151100.1	Wheat	cytosol	41.65	57.32
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	23.91	41.72
KXG27434	Sorghum	cytosol	42.45	40.33
OQU87670	Sorghum	cytosol	33.41	35.1
OQU91075	Sorghum	cytosol	8.58	23.51
KXG36525	Sorghum	plastid	8.12	21.58
EER90141	Sorghum	plastid	7.78	19.83
EES05216	Sorghum	cytosol	6.41	18.48
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	7.32	16.08
EES18812	Sorghum	cytosol	8.47	15.45
KXG25821	Sorghum	cytosol	8.24	15.03
KXG37566	Sorghum	plastid	7.89	12.0
EES04226	Sorghum	nucleus	9.73	11.9

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	UniProt:A0A1Z5S6L0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043
GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1
HAMAP:MF_03022	EnsemblPlants:OQU91573	ProteinID:OQU91573	ProteinID:OQU91573.1	PFAM:PF00400	PFAM:PF13925
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF14
SMART:SM00320	EnsemblPlantsGene:SORBI_3001G207400	SUPFAM:SSF50978	UniParc:UPI000B425DB4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:18918948..18926199

Molecular Weight (calculated)

96247.1 Da

IEP (calculated)

7.250

GRAVY (calculated)

-0.301

Length

874 amino acids

Sequence
(BLAST)

001: MATTPAYKLQ EFVAHASNVN CAKFGRRTSR ILITGGEDLK VNLWAVGKPS ALLSLSGFTS PVESVSFDSS EVTIGAGAAS GTIKIWNIEE GKVVRTFTGH
101: RSNCASLDFH PFGEFLASGS SDTNMKIWDT RKKRCIHTYK GHTRRINVLK FTPDGRWIVS GGADNSVKVW DLTAGKLMHD FRLHEGPVNC LDVHPHEFLL
201: ATGSVDKTLK FWDLETFELI GSSGPENSRE YFEPASVIRS MKFNSDGKTI FCGLHESLKV LSWEPIICHD VVDVGWSTLA DLTVDEQKLL GCSYNQNCVS
301: VWVVDLMRNE PYVDSNSGPR LNGSVNRLVE SDDSMSSVFG RLSVSRSPAN EIGLGTLLGR SMSASKEIPV STSASTKGLS KPPGKRDLQL TRSVSTPLLS
401: PRVRLNPNFI DRRKNQPAAA VPLPEPIVRF KANLSSDAGM LSRSSHASEA PMYRSRSNSS RYGIMESSSL PVLTLRHSPR KDAGPVLSEA ATVDLADIEP
501: QNIEKVGLAA NHGKEDGKLV PVIVSRSSKM VEEVGCRRIT NDVGYKKVTL ENSLRVNSDI DYRRRAPESQ EVQQLIPLSE PISSSQRKFI RESSGAGDNN
601: CSGLMCTESV ESNEVGSWYS VTSFDKWNPA AARNPEFASI HRNEVVGISQ LMESSGEHAV DDRPSSSNFD SIQYVTTPYN SRLRPSLSGK LSASASDEDD
701: MSGLMENHQE FIHVMKSRLT KLEVVYRCWQ RNDIKGSIDA TWRMLDFAVT TDIVNALMEN RNCITLDVCA SVLRLTANLL ESTYDRHMSI ALGMILSLVK
801: SFGSTISSAL SATPPVGVDL EAEQRLERCN LCFQELKNVS TSLKFLTRRQ GEVGRSAQEL NLFLQDIFQL SSSV

Best Arabidopsis Sequence Match ( AT5G08390.1 )
(BLAST)

001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.