CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	93.88	98.77
Os06t0653800-01	Rice	nucleus	97.08	97.08
TraesCS7A01G499900.1	Wheat	nucleus	95.63	94.8
TraesCS7D01G486800.1	Wheat	cytosol, plastid	95.34	94.51
TraesCS7B01G406900.1	Wheat	cytosol, plastid	95.34	94.51
HORVU7Hr1G111780.2	Barley	cytosol, plastid	95.34	94.51
GSMUA_Achr3P04370_001	Banana	cytosol	77.84	82.92
VIT_05s0094g00800.t01	Wine grape	cytosol	81.05	80.81
KRH06660	Soybean	nucleus	79.3	78.84
Solyc03g059100.1.1	Tomato	nucleus	74.64	78.53
KRG94875	Soybean	nucleus	78.72	78.26
Bra003387.1-P	Field mustard	cytosol	75.8	77.38
PGSC0003DMT400067694	Potato	cytosol	76.38	77.06
AT2G43770.1	Thale cress	cytosol	76.68	76.68
CDX67810	Canola	cytosol	76.68	73.26
Bra004783.1-P	Field mustard	cytosol, golgi	76.97	63.61
CDX79802	Canola	cytosol, golgi	76.97	63.61
CDY17912	Canola	cytosol, golgi	77.26	63.55
CDX98392	Canola	endoplasmic reticulum, extracellular	75.51	58.47
OQU91075	Sorghum	cytosol	26.53	28.53
KXG36525	Sorghum	plastid	25.07	26.14
EES05216	Sorghum	cytosol	19.53	22.11
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	23.03	19.85
EES18812	Sorghum	cytosol	24.2	17.33
KXG25821	Sorghum	cytosol	18.95	13.57
KXG37566	Sorghum	plastid	21.28	12.7
EES04226	Sorghum	nucleus	17.78	8.54
OQU87670	Sorghum	cytosol	20.7	8.53
KXG27434	Sorghum	cytosol	22.74	8.48
OQU91573	Sorghum	plastid	19.83	7.78

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	EntrezGene:8069357	UniProt:C5Z768	EnsemblPlants:EER90141	ProteinID:EER90141
ProteinID:EER90141.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	EnsemblPlantsGene:SORBI_3010G213200	SUPFAM:SSF50978	unigene:Sbi.1507
UniParc:UPI0001A89AF1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002438774.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:55613550..55618552

Molecular Weight (calculated)

38158.4 Da

IEP (calculated)

7.892

GRAVY (calculated)

-0.470

Length

343 amino acids

Sequence
(BLAST)

001: MFSAPGNNSL ALVAPRPGME LANVQHPNQA PGPGGKQRTS SLEAPIMLLT GHQSAIYCMK FNPAGTVIAS GSHDKDIFLW YVHGECKNFM VLRGHKNAIL
101: DLQWTTDGTQ IISASPDKTV RVWDVETGKQ VKKMAEHSSF VNSCCPARKW PPLVVSGSDD GTAKLWDLRQ RGAIQTLPDK YQITAVSFSE AADKVFTGGL
201: DNDVKWWDLR KNEVTEYLKG HQDMITGMQL SPDGSYLLTN AMDNELKIWD LRPYAPENRN IKTLTGHQHN FEKNLLKCSW SPDNRKVTAG SADRMVYIWD
301: TTSRRILYKL PGHNGSVNET AFHPTEPIIG SCGSDKQIYL GEL

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.