CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67810	Canola	cytosol	77.65	95.82
KRH06660	Soybean	nucleus	65.46	84.06
KRG94875	Soybean	nucleus	65.24	83.77
Solyc03g059100.1.1	Tomato	nucleus	61.4	83.44
VIT_05s0094g00800.t01	Wine grape	cytosol	64.11	82.56
PGSC0003DMT400067694	Potato	cytosol	62.08	80.88
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	58.01	78.83
GSMUA_Achr3P04370_001	Banana	cytosol	56.66	77.95
Zm00001d036709_P001	Maize	cytosol	57.34	77.91
EER90141	Sorghum	plastid	58.47	75.51
CDY17912	Canola	cytosol, golgi	70.65	75.06
CDX79802	Canola	cytosol, golgi	70.2	74.94
TraesCS7B01G406900.1	Wheat	cytosol, plastid	58.01	74.28
Os06t0653800-01	Rice	nucleus	57.34	74.05
TraesCS7D01G486800.1	Wheat	cytosol, plastid	57.79	73.99
TraesCS7A01G499900.1	Wheat	nucleus	57.79	73.99
HORVU7Hr1G111780.2	Barley	cytosol, plastid	57.56	73.7
CDX86957	Canola	cytosol	20.09	28.53
CDY00226	Canola	cytosol, nucleus, plastid	20.09	28.25
CDX70436	Canola	plastid	10.38	27.54
CDX91316	Canola	cytosol	19.86	26.99
CDX97287	Canola	cytosol	19.86	26.99
CDX84544	Canola	cytosol	17.83	26.33
CDY08856	Canola	cytosol	17.61	26.26
CDY54233	Canola	golgi	9.48	22.58
CDY08014	Canola	mitochondrion	4.29	18.63
CDX72090	Canola	mitochondrion	13.77	18.26
CDX77842	Canola	cytosol, nucleus, peroxisome	4.06	18.18
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	12.87	17.87
CDY52843	Canola	nucleus	9.26	17.67
CDX96351	Canola	cytosol	15.35	17.04
CDX84790	Canola	cytosol	18.28	17.02
CDY27046	Canola	cytosol	18.28	17.02
CDX96156	Canola	cytosol	18.06	16.81
CDX72834	Canola	cytosol	14.9	16.58
CDY09645	Canola	cytosol	17.61	16.49
CDY36678	Canola	cytosol	14.45	16.45
CDX68298	Canola	cytosol	14.22	16.2
CDX98931	Canola	nucleus	16.7	15.42
CDY05801	Canola	cytosol	17.16	15.14
CDX70097	Canola	cytosol	15.35	14.72
CDY05802	Canola	mitochondrion	17.61	13.57
CDY34965	Canola	cytosol	14.0	13.19
CDY09730	Canola	cytosol	14.22	13.1
CDX90556	Canola	cytosol	14.22	13.1
CDY28352	Canola	cytosol	13.77	12.79
CDX91118	Canola	nucleus	16.48	11.34
CDX70506	Canola	nucleus	15.8	11.13
CDX85646	Canola	nucleus	16.25	11.13
CDX78524	Canola	nucleus	16.25	10.78
CDY44171	Canola	cytosol	3.61	10.32
CDY27174	Canola	cytosol	3.39	9.8
CDX88026	Canola	cytosol	16.93	9.05
CDY34658	Canola	mitochondrion	15.35	8.88
CDX80363	Canola	cytosol	16.93	8.82
CDY60225	Canola	cytosol	16.03	8.5
CDX81101	Canola	cytosol	16.03	8.44
CDY34846	Canola	nucleus	15.58	7.57
CDY52222	Canola	cytosol	16.7	6.6
CDY03812	Canola	cytosol	16.48	6.5
CDY15006	Canola	cytosol	14.45	6.31
CDY01533	Canola	plastid	1.58	4.43
CDY69403	Canola	nucleus	1.13	2.7

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX98392	ProteinID:CDX98392	ProteinID:CDX98392.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00105975001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978	SignalP:SignalP-noTM
UniParc:UPI0004EE6644	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC06g17530D

Coordinates

chrLK031904:-:1054741..1058096

Molecular Weight (calculated)

49244.9 Da

IEP (calculated)

7.372

GRAVY (calculated)

-0.279

Length

443 amino acids

Sequence
(BLAST)

001: MYTITDHPFL ICFISLTIIA EVITGTPEIN LQSRLDCSKS PSDCEHKPRN PSALASPKKQ LESLSVSSLI LLSGKLLKTF FFTLRSLWRL QTAELVSLYS
101: PSHLEAKMDI VKRDNEPMEW STVPYNAPQG PVSNGKQRTS SLEAPIMLLS GHQSAIYTMK FNPAGTVIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
201: DLHWTGDGSQ IVSASPDKTV RAWDVETGKQ VKKMAEHSSF VNSCCPSRRG LPLIVSGSDD GTAKLWDMRQ RGAVQTFPDK YQITAVSFSD PADKIFTGGV
301: DNDVKVWDLR KGEAIMTLEG HQDTITGMSL SPDGSYLLTN AMDCKLCVWD MRPYAPQDRC VKIFEGHQHN FEKNLLKCAW SPDGSKVTAG SADRMVHIWD
401: TTSRRILYKL PGHNGSVNEC VFHPHEPIIG SCSSDNLIYL GEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.