Factsheet for Zm00001d046930_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036709_P001	Maize	cytosol	97.24	97.24
EER90141	Sorghum	plastid	98.77	93.88
Os06t0653800-01	Rice	nucleus	97.55	92.71
TraesCS7A01G499900.1	Wheat	nucleus	95.09	89.6
TraesCS7D01G486800.1	Wheat	cytosol, plastid	94.79	89.31
TraesCS7B01G406900.1	Wheat	cytosol, plastid	94.79	89.31
HORVU7Hr1G111780.2	Barley	cytosol, plastid	94.79	89.31
GSMUA_Achr3P04370_001	Banana	cytosol	79.45	80.43
Solyc03g059100.1.1	Tomato	nucleus	77.91	77.91
VIT_05s0094g00800.t01	Wine grape	cytosol	82.21	77.91
Bra003387.1-P	Field mustard	cytosol	79.14	76.79
KRH06660	Soybean	nucleus	80.37	75.94
KRG94875	Soybean	nucleus	80.06	75.65
PGSC0003DMT400067694	Potato	cytosol	78.53	75.29
AT2G43770.1	Thale cress	cytosol	79.14	75.22
CDX67810	Canola	cytosol	80.06	72.7
CDX79802	Canola	cytosol, golgi	79.45	62.41
Bra004783.1-P	Field mustard	cytosol, golgi	79.45	62.41
CDY17912	Canola	cytosol, golgi	79.75	62.35
CDX98392	Canola	endoplasmic reticulum, extracellular	78.83	58.01
Zm00001d033849_P002	Maize	extracellular, nucleus	27.3	27.9
Zm00001d021868_P001	Maize	plastid	26.38	26.22
Zm00001d021866_P001	Maize	plastid	26.38	26.22
Zm00001d050708_P002	Maize	cytosol	20.55	22.11
Zm00001d041945_P003	Maize	cytosol	24.23	18.59
Zm00001d039211_P006	Maize	cytosol	24.85	16.3
Zm00001d011779_P005	Maize	cytosol	24.23	16.12
Zm00001d033994_P002	Maize	mitochondrion, nucleus	23.01	14.79
Zm00001d033309_P003	Maize	cytosol	19.94	13.46
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	16.26	10.58
Zm00001d026621_P006	Maize	cytosol	24.23	8.68
Zm00001d001828_P033	Maize	cytosol	24.54	8.68
Zm00001d012620_P025	Maize	cytosol	21.78	8.51
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	18.71	8.5
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	19.63	6.93

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	UniProt:A0A1D6P5H9	ProteinID:AQL05201.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0008427E97	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d046930	EnsemblPlants:Zm00001d046930_P001	EnsemblPlants:Zm00001d046930_T001	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr9:+:111511279..111512259

Molecular Weight (calculated)

36530.3 Da

IEP (calculated)

7.624

GRAVY (calculated)

-0.528

Length

326 amino acids

Sequence
(BLAST)

001: MELANIQHHP NQAPGPGGKQ RTSSLEAPIM LLTGHQSAIY CMKFNPAGTV IASGSHDKDI FLWYVHGECK NFMVLRGHKN AILDLQWTTD GTQIISASPD
101: KTVRVWDVET GKQVKKMAEH SSFVNSCCPA RKWPPLVVSG SDDGTAKLWD LRQRGAIQTL PDKYQITAVS FSEAADKVFT GGLDNDVKWW DLRKNETTEY
201: LKGHQDMITG MQLSPDGSYL LTNAMDNELK IWDLRPYAPE NRNIKTLTGH QHNFEKNLLK CSWSPDNRKV TAGSADRMVY IWDTTSRRIL YKLPGHNGSV
301: NETAFHPTEP IIGSCGSDKQ IYLGEL

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.