CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004783.1-P	Field mustard	cytosol, golgi	99.52	99.52
CDY17912	Canola	cytosol, golgi	98.31	97.84
AT2G43770.1	Thale cress	cytosol	75.42	91.25
CDX67810	Canola	cytosol	73.49	84.96
VIT_05s0094g00800.t01	Wine grape	cytosol	68.43	82.56
Solyc03g059100.1.1	Tomato	nucleus	64.34	81.9
KRH06660	Soybean	nucleus	67.47	81.16
KRG94875	Soybean	nucleus	67.47	81.16
PGSC0003DMT400067694	Potato	cytosol	66.02	80.59
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	62.41	79.45
Zm00001d036709_P001	Maize	cytosol	61.69	78.53
GSMUA_Achr3P04370_001	Banana	cytosol	60.0	77.33
EER90141	Sorghum	plastid	63.61	76.97
Os06t0653800-01	Rice	nucleus	63.13	76.38
TraesCS7B01G406900.1	Wheat	cytosol, plastid	63.37	76.01
TraesCS7A01G499900.1	Wheat	nucleus	63.13	75.72
TraesCS7D01G486800.1	Wheat	cytosol, plastid	62.89	75.43
HORVU7Hr1G111780.2	Barley	cytosol, plastid	62.89	75.43
CDX98392	Canola	endoplasmic reticulum, extracellular	74.94	70.2
CDY00226	Canola	cytosol, nucleus, plastid	22.17	29.21
CDX86957	Canola	cytosol	21.93	29.17
CDX91316	Canola	cytosol	21.45	27.3
CDX97287	Canola	cytosol	21.45	27.3
CDX70436	Canola	plastid	10.84	26.95
CDY08856	Canola	cytosol	19.28	26.94
CDX84544	Canola	cytosol	19.28	26.67
CDY54233	Canola	golgi	9.88	22.04
CDX72090	Canola	mitochondrion	14.94	18.56
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	13.98	18.18
CDY52843	Canola	nucleus	10.12	18.1
CDY08014	Canola	mitochondrion	4.34	17.65
CDY36678	Canola	cytosol	16.39	17.48
CDY27046	Canola	cytosol	20.0	17.44
CDX84790	Canola	cytosol	20.0	17.44
CDX96351	Canola	cytosol	16.63	17.29
CDX96156	Canola	cytosol	19.76	17.23
CDX77842	Canola	cytosol, nucleus, peroxisome	4.1	17.17
CDX68298	Canola	cytosol	15.9	16.97
CDX72834	Canola	cytosol	16.14	16.83
CDY09645	Canola	cytosol	19.04	16.7
CDY05801	Canola	cytosol	18.8	15.54
CDX98931	Canola	nucleus	17.83	15.42
CDX70097	Canola	cytosol	16.39	14.72
CDY05802	Canola	mitochondrion	19.52	14.09
CDX90556	Canola	cytosol	15.9	13.72
CDY09730	Canola	cytosol	15.9	13.72
CDY34965	Canola	cytosol	15.42	13.62
CDY28352	Canola	cytosol	14.94	13.0
CDX91118	Canola	nucleus	16.87	10.87
CDX85646	Canola	nucleus	16.63	10.66
CDX70506	Canola	nucleus	16.14	10.65
CDX78524	Canola	nucleus	16.63	10.33
CDY44171	Canola	cytosol	3.61	9.68
CDX88026	Canola	cytosol	18.55	9.29
CDX80363	Canola	cytosol	18.8	9.18
CDY27174	Canola	cytosol	3.37	9.15
CDY34658	Canola	mitochondrion	16.39	8.88
CDY60225	Canola	cytosol	17.59	8.74
CDX81101	Canola	cytosol	17.35	8.56
CDY34846	Canola	nucleus	16.39	7.46
CDY52222	Canola	cytosol	17.83	6.6
CDY03812	Canola	cytosol	17.59	6.5
CDY15006	Canola	cytosol	15.42	6.31
CDY69403	Canola	nucleus	0.96	2.16
CDY01533	Canola	plastid	0.72	1.9

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlants:CDX79802	ProteinID:CDX79802	ProteinID:CDX79802.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00132633001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE6DBD
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA05g03540D

Coordinates

chrLK031819:+:218372..221303

Molecular Weight (calculated)

45627.4 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.362

Length

415 amino acids

Sequence
(BLAST)

001: MSGVPGLSFL GPKSKNAVVA GGLTAFVFGV YFYTMKAVGG TDELQMAIDK FEDKKQVETD PKGSGNDVER FLPFSPSSDL EMEIMPRENE NALSAPTPME
101: LGPGPYGKQR TSSLEAPIML LTGHPSAVYT MKFNPSGTLI ASGSHDREIF LWRVHGDCKN FMVLKGHKNA ILDLHWTSDG SMIVSASPDK TVRAWDVETG
201: KQVKKMAEHS SFVNSCCPTR RGLPLIISGS DDGTAKLWDL RQRGAIQTFP DKYQITAVSF SDAADKIFTG GVDNDVKVWD LRKGEATMTL EGHQDTITGM
301: SLSPDGSYLL TNGMDNKLCV WDMRPYAPQN RCVKVFEGHQ HNFEKNLLKC SWSPDGTKVT AGSADRMVHI WDTTTRRILY KLPGHKGSVN ECVFHPSEPI
401: IGSCSSDKDI YLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.