Factsheet for PGSC0003DMT400067694

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g059100.1.1	Tomato	nucleus	94.71	98.77
VIT_05s0094g00800.t01	Wine grape	cytosol	87.94	86.92
KRH06660	Soybean	nucleus	86.47	85.22
KRG94875	Soybean	nucleus	86.18	84.93
AT2G43770.1	Thale cress	cytosol	84.41	83.67
Bra003387.1-P	Field mustard	cytosol	80.88	81.85
GSMUA_Achr3P04370_001	Banana	cytosol	74.41	78.57
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	75.29	78.53
Zm00001d036709_P001	Maize	cytosol	74.71	77.91
CDX67810	Canola	cytosol	81.18	76.88
Os06t0653800-01	Rice	nucleus	77.35	76.68
EER90141	Sorghum	plastid	77.06	76.38
TraesCS7B01G406900.1	Wheat	cytosol, plastid	76.47	75.14
TraesCS7A01G499900.1	Wheat	nucleus	76.18	74.86
HORVU7Hr1G111780.2	Barley	cytosol, plastid	75.88	74.57
TraesCS7D01G486800.1	Wheat	cytosol, plastid	75.88	74.57
Bra004783.1-P	Field mustard	cytosol, golgi	80.59	66.02
CDX79802	Canola	cytosol, golgi	80.59	66.02
CDY17912	Canola	cytosol, golgi	80.59	65.71
CDX98392	Canola	endoplasmic reticulum, extracellular	80.88	62.08
PGSC0003DMT400049837	Potato	cytosol, plastid	27.35	29.52
PGSC0003DMT400078695	Potato	cytosol	26.76	28.98
PGSC0003DMT400010145	Potato	cytosol	22.65	25.75
PGSC0003DMT400023040	Potato	mitochondrion	18.53	20.52
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	23.24	19.9
PGSC0003DMT400046634	Potato	cytosol	25.0	17.67
PGSC0003DMT400039207	Potato	cytosol	20.59	13.75
PGSC0003DMT400056446	Potato	cytosol	20.59	12.26
PGSC0003DMT400065114	Potato	cytosol	19.12	8.01
PGSC0003DMT400057760	Potato	cytosol	2.65	1.13
PGSC0003DMT400056447	Potato	extracellular	0.29	0.94

Protein Annotations

EntrezGene:102605588	MapMan:16.4.1.4.3	Gene3D:2.130.10.10	ProteinID:ABF00074	ProteinID:ABF00074.1	EMBL:DQ423029
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M1CHQ5	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400026328	PGSC:PGSC0003DMG400026328	EnsemblPlants:PGSC0003DMT400067694
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002959E12	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_006342303.1	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026328]

Coordinates

chr3:-:17989957..17995428

Molecular Weight (calculated)

37402.7 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.364

Length

340 amino acids

Sequence
(BLAST)

001: MQTESALSVM GPRPMELSAV LPSGPQGLGP NGKPRTSSLE SPIMLLSGHQ SAVYTMKFNP AGTIIASGSH DKEIFLWNVH GDCKNFMVLK GHKNAVLDVQ
101: WTTDGSTIVS ASPDKTVRAW DVETGKQIKK MAEHSSFVNS CCPARRGPPL IVSGSDDGTA KLWDMRQRGA IQTFPDKFQI TAVSFSDASD KICTGGIDND
201: VKLWDLRRCE VTMTLQGHQD TITGMQLSPD GSYLLTNAMD CTLRIWDMRP YAPQNRCVKI LEGHQHNFEK NLLKCSWSPD GSKVTGGSSD RMVYVWDTTS
301: RRILYKLPGH TGCVNECVFH PNEPIVGSCS SDKQMYLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.