Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plastid 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 nucleus: 19621931
cytosol: 19685898
nucleus: 26035336
msms PMID: 19685898 doi
KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita
Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d046930_P001 Maize cytosol, extracellular, plasma membrane 92.71 97.55
EER90141 Sorghum plastid 97.08 97.08
Zm00001d036709_P001 Maize cytosol 91.25 96.01
TraesCS7A01G499900.1 Wheat nucleus 95.04 94.22
TraesCS7D01G486800.1 Wheat cytosol, plastid 94.75 93.93
TraesCS7B01G406900.1 Wheat cytosol, plastid 94.75 93.93
HORVU7Hr1G111780.2 Barley cytosol, plastid 94.75 93.93
GSMUA_Achr3P04370_001 Banana cytosol 76.68 81.68
VIT_05s0094g00800.t01 Wine grape cytosol 79.3 79.07
Solyc03g059100.1.1 Tomato nucleus 74.93 78.83
KRH06660 Soybean nucleus 77.84 77.39
PGSC0003DMT400067694 Potato cytosol 76.68 77.35
KRG94875 Soybean nucleus 77.55 77.1
Bra003387.1-P Field mustard cytosol 74.34 75.89
AT2G43770.1 Thale cress cytosol 75.51 75.51
CDX67810 Canola cytosol 75.22 71.87
Bra004783.1-P Field mustard cytosol, golgi 76.38 63.13
CDX79802 Canola cytosol, golgi 76.38 63.13
CDY17912 Canola cytosol, golgi 76.68 63.07
CDX98392 Canola endoplasmic reticulum, extracellular 74.05 57.34
Os03t0725400-02 Rice cytosol 27.41 29.01
Os07t0572000-01 Rice plastid 25.95 26.33
Os02t0543400-01 Rice cytosol, mitochondrion 20.12 22.92
Os03t0685600-01 Rice cytosol 24.2 21.07
Os10t0104500-01 Rice cytosol 24.49 17.5
Os11t0594200-01 Rice cytosol 24.2 17.29
Os03t0746600-01 Rice nucleus 21.57 14.48
Os03t0339100-01 Rice nucleus 18.37 13.35
Os01t0780400-02 Rice cytosol 21.28 8.71
Os10t0494800-01 Rice cytosol 20.12 7.89
Os04t0677700-00 Rice cytosol 20.41 7.87
Os01t0531300-00 Rice endoplasmic reticulum, extracellular 0.87 1.35
Os01t0951000-02 Rice cytosol, mitochondrion, nucleus 0.29 0.35
Protein Annotations
MapMan:16.4.1.4.3Gene3D:2.130.10.10EntrezGene:4341706EMBL:AK103633EMBL:AK111971ProteinID:BAD37418.1
ProteinID:BAD37540.1ProteinID:BAF20155.1ProteinID:BAS98926.1InterPro:G-protein_beta_WD-40_repGO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986EnsemblPlantsGene:Os06g0653800EnsemblPlants:Os06t0653800-01
PFAM:PF00400PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR44006
UniProt:Q67WC9SMART:SM00320SUPFAM:SSF50978UniParc:UPI00004262AAInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeat
InterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfRefSeq:XP_015643086.1::
Description
OsWD40-133Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5 snRNP- specific 40 kDa protein) (38 kDa splicing factor). (Os06t0653800-01)
Coordinates
chr6:-:26779067..26781799
Molecular Weight (calculated)
38203.4 Da
IEP (calculated)
7.890
GRAVY (calculated)
-0.500
Length
343 amino acids
Sequence
(BLAST)
001: MFPPGNNSLA LSAPRPGMEL ANIQQHPNQA LGPGGKQRTS SLEAPIMLLT GHQSAVYCMK FNPAGTVIAS GSHDKDIFLW YVHGDCKNYM VLRGHKNAVL
101: DLQWTTDGTQ IISASPDKTV RVWDVETGKQ VKKMAEHSSF VNSCCPARKW PPLVVSGSDD GTAKLWDLRQ RGAIQTLPDK YQITAVSFSE AADKVFTGGL
201: DNDVKWWDLR KNEVTEYLKG HQDMITGMQL SPDGSYLLTN AMDNELKIWD LRPYAPENRN IKTLTGHQHN FEKNLLKCSW SPDNRKVTAG SADRMVYIWD
301: TTSRRILYKL PGHNGSVNET AFHPTEPVIG SCGSDKQIYL GEL
Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)
001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
Arabidopsis Description
At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.