Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 4
- vacuole 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0780400-02 | Rice | cytosol | 86.49 | 22.91 |
| Os10t0494800-01 | Rice | cytosol | 36.94 | 9.37 |
| Os04t0677700-00 | Rice | cytosol | 37.39 | 9.33 |
| Os01t0951000-02 | Rice | cytosol, mitochondrion, nucleus | 5.41 | 4.24 |
| Os03t0725400-02 | Rice | cytosol | 2.25 | 1.54 |
| Os07t0572000-01 | Rice | plastid | 1.8 | 1.18 |
| Os03t0339100-01 | Rice | nucleus | 2.25 | 1.06 |
| Os03t0685600-01 | Rice | cytosol | 1.8 | 1.02 |
| Os06t0653800-01 | Rice | nucleus | 1.35 | 0.87 |
| VIT_13s0064g00330.t01 | Wine grape | extracellular | 0.45 | 0.76 |
| CDY09645 | Canola | cytosol | 1.35 | 0.63 |
| AT5G52820.1 | Thale cress | cytosol | 1.35 | 0.63 |
| CDY27046 | Canola | cytosol | 1.35 | 0.63 |
| CDX96156 | Canola | cytosol | 1.35 | 0.63 |
| CDX84790 | Canola | cytosol | 1.35 | 0.63 |
| Bra022611.1-P | Field mustard | cytosol | 1.35 | 0.63 |
| VIT_13s0064g00360.t01 | Wine grape | nucleus | 1.35 | 0.63 |
| GSMUA_Achr3P29050_001 | Banana | nucleus | 1.35 | 0.63 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 0.9 | 0.63 |
| KRH70275 | Soybean | nucleus | 1.35 | 0.62 |
| KRH08668 | Soybean | nucleus | 1.35 | 0.62 |
| Os10t0104500-01 | Rice | cytosol | 1.35 | 0.62 |
| Os11t0594200-01 | Rice | cytosol | 1.35 | 0.62 |
| PGSC0003DMT400046634 | Potato | cytosol | 1.35 | 0.62 |
| Solyc03g112530.2.1 | Tomato | nucleus | 1.35 | 0.62 |
| Os03t0746600-01 | Rice | nucleus | 1.35 | 0.59 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 0.45 | 0.33 |
| CDY52843 | Canola | nucleus | 0.0 | 0.0 |
| Bra003111.1-P | Field mustard | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os01t0531300-00 | EnsemblPlantsGene:Os01g0531300 | InterPro:Katanin_C-terminal | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | PFAM:PF13925 |
| ProteinID:BAS72511.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI000393BF78 | UniProt:A0A0P0V3J5 | MapMan:35.1 |
Description
Hypothetical conserved gene. (Os01t0531300-00)
Coordinates
chr1:-:19123194..19126486
Molecular Weight (calculated)
24562.2 Da
IEP (calculated)
6.855
GRAVY (calculated)
0.338
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: LYLCSIFICS CSLAFTNFSI TQIIIFCNGC NGQAEPSQAY EKDLSTIDEA MIPIDLMQSH DEFINAVKSR LTKLEMMRHV FDQNGIKGAI AAVAKLPDNA
101: VQADVVSTLK RKLDLFSLDI FLSFLPVLAG LLTSKAERHA IVSLELLLDL IKIFGPVIRS TLSAHSAVGV DIQAEQRLQR CSRCFNHLQK IQQVLHPLIM
201: RGGQSAQLAQ ELNLSLHDLV VI
101: VQADVVSTLK RKLDLFSLDI FLSFLPVLAG LLTSKAERHA IVSLELLLDL IKIFGPVIRS TLSAHSAVGV DIQAEQRLQR CSRCFNHLQK IQQVLHPLIM
201: RGGQSAQLAQ ELNLSLHDLV VI
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.