Factsheet for Os03t0339100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0225100-01
Os01t0253300-01
Os04t0348300-01
Os05t0530500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	Os04t0348300-01	AT1G09770.1	17575050
AT4G15900.1	Os05t0530500-02	AT3G29160.1	10220464
AT4G15900.1	Os01t0253300-01	AT4G02150.1	9765207
AT4G15900.1	Os01t0225100-01	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P10210_001	Banana	cytosol	18.43	91.58
KXG25821	Sorghum	cytosol	91.74	90.4
Zm00001d033309_P003	Maize	cytosol	91.74	89.65
TraesCS3D01G181100.1	Wheat	cytosol	90.89	89.56
TraesCS3B01G205300.1	Wheat	cytosol	90.47	89.14
GSMUA_Achr8P10200_001	Banana	cytosol	16.74	88.76
TraesCS3A01G175600.2	Wheat	plastid	89.83	88.7
CDY27174	Canola	cytosol	25.64	79.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	80.72	78.4
HORVU3Hr1G035450.7	Barley	mitochondrion	84.75	78.12
KRH12069	Soybean	nucleus	76.06	75.42
VIT_05s0077g02310.t01	Wine grape	cytosol	76.91	75.0
KRH37088	Soybean	nucleus	75.64	74.84
PGSC0003DMT400023040	Potato	mitochondrion	47.67	73.29
Bra012753.1-P	Field mustard	cytosol	74.36	72.97
AT4G15900.1	Thale cress	cytosol	74.36	72.22
Bra007287.1-P	Field mustard	cytosol	59.53	70.25
CDY44171	Canola	cytosol	22.67	69.03
AT3G16650.1	Thale cress	cytosol	69.28	68.27
Bra021188.1-P	Field mustard	cytosol	69.92	66.4
Solyc09g010620.1.1	Tomato	cytosol	21.82	63.19
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	35.59	60.87
Os02t0543400-01	Rice	cytosol, mitochondrion	14.41	22.59
Os03t0725400-02	Rice	cytosol	15.47	22.53
Os07t0572000-01	Rice	plastid	15.04	21.01
Os03t0685600-01	Rice	cytosol	15.89	19.04
Os06t0653800-01	Rice	nucleus	13.35	18.37
Os10t0104500-01	Rice	cytosol	18.43	18.12
Os11t0594200-01	Rice	cytosol	18.43	18.12
Os03t0746600-01	Rice	nucleus	14.62	13.5
Os01t0780400-02	Rice	cytosol	16.31	9.19
Os10t0494800-01	Rice	cytosol	15.68	8.46
Os04t0677700-00	Rice	cytosol	13.77	7.3
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	1.06	2.25
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	0.85	1.41

Protein Annotations

MapMan:16.4.5.1.3	Gene3D:2.130.10.10	EntrezGene:4332781	ProteinID:ABF95840.1	EMBL:AK111641	ProteinID:BAF11972.2
ProteinID:BAS84107.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005662	GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0071011	GO:GO:0071013	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os03g0339100	EnsemblPlants:Os03t0339100-01	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19923	UniProt:Q10LQ8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0000DB4D85	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_015631891.1	RefSeq:XP_015631892.1	RefSeq:XP_015631893.1	SEG:seg	:

Description

OsWD40-70Similar to PRL1 protein. (Os03t0339100-01)

Coordinates

chr3:+:12599500..12605800

Molecular Weight (calculated)

52101.9 Da

IEP (calculated)

9.200

GRAVY (calculated)

-0.395

Length

472 amino acids

Sequence
(BLAST)

001: MATAEPVEPQ SLKKLSLKSL KRSHDLFAPT HSLLFTPDPE SKQVRVGCKV NAEYSAVKNL PTDQGRGQVK SAAAPSTALA LPGTQDVKDA DNKGSSTAIV
101: PAPHMLPKAP DSTIPGKNTT ITIPGSSDRF STSALMERIP SRWPRPVWHA PWKNYRVISG HLGWVRSIAF DPSNEWFCTG SADRTIKIWD LASGTLKLTL
201: TGHIEQIRGL AVSQRHTYLF SAGDDKQVKC WDLEQNKVIR SYHGHLSGVY CLALHPTIDI LLTGGRDSVC RVWDIRTKAH VSALTGHDNT VCSVFARPTD
301: PQVVTGSHDS TIKFWDLVAG RTMCTLTHHK KSVRAMALHP KEKSFASASA DNIKKFSLPK GEFLHNMLSQ QKTIINSMAV NEDGVLATGG DNGSLWFWDW
401: KSGHNFQQDQ TIVQPGSLES EACIYALSYD VSGSRLVTCE ADKTIKMWKE DLSATPETHP INFKPPKDIR RY

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.