Factsheet for GSMUA_Achr8P10200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P22850_001
GSMUA_Achr7P01270_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001
GSMUA_Achr8P07200_001
GSMUA_Achr9P23340_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	GSMUA_Achr9P23340_001	AT1G09770.1	17575050
AT4G15900.1	GSMUA_Achr10P...	AT3G29160.1	10220464
AT4G15900.1	GSMUA_AchrUn_...	AT3G29160.1	10220464
AT4G15900.1	GSMUA_Achr8P07200_001	AT4G05420.1	18223036
AT4G15900.1	GSMUA_Achr4P22850_001	AT5G46210.1	18223036
AT4G15900.1	GSMUA_Achr7P01270_001	AT5G46210.1	18223036
AT4G15900.1	GSMUA_Achr7P14310_001	AT5G58720.1	10220464
AT4G15900.1	GSMUA_Achr7P14320_001	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27174	Canola	cytosol	42.7	24.84
CDY44171	Canola	cytosol	40.45	23.23
PGSC0003DMT400023040	Potato	mitochondrion	69.66	20.2
Solyc09g010620.1.1	Tomato	cytosol	34.83	19.02
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	95.51	17.49
Bra007287.1-P	Field mustard	cytosol	77.53	17.25
Os03t0339100-01	Rice	nucleus	88.76	16.74
TraesCS3A01G175600.2	Wheat	plastid	89.89	16.74
KXG25821	Sorghum	cytosol	89.89	16.7
TraesCS3D01G181100.1	Wheat	cytosol	89.89	16.7
TraesCS3B01G205300.1	Wheat	cytosol	89.89	16.7
Zm00001d033309_P003	Maize	cytosol	89.89	16.56
VIT_05s0077g02310.t01	Wine grape	cytosol	88.76	16.32
KRH12069	Soybean	nucleus	86.52	16.18
Bra012753.1-P	Field mustard	cytosol	85.39	15.8
KRH37088	Soybean	nucleus	84.27	15.72
AT4G15900.1	Thale cress	cytosol	85.39	15.64
HORVU3Hr1G035450.7	Barley	mitochondrion	89.89	15.62
Bra021188.1-P	Field mustard	cytosol	77.53	13.88
AT3G16650.1	Thale cress	cytosol	73.03	13.57
GSMUA_Achr2P08580_001	Banana	cytosol	22.47	7.04
GSMUA_Achr3P29050_001	Banana	nucleus	33.71	6.28
GSMUA_Achr3P27210_001	Banana	golgi	31.46	5.92
GSMUA_Achr11P...	Banana	cytosol	22.47	5.8
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	21.35	5.64
GSMUA_Achr6P13100_001	Banana	cytosol	17.98	5.26
GSMUA_Achr7P01850_001	Banana	plastid	13.48	5.13
GSMUA_Achr8P28660_001	Banana	cytosol	19.1	5.04
GSMUA_Achr3P04370_001	Banana	cytosol	14.61	4.04
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	31.46	3.53
GSMUA_Achr4P29380_001	Banana	nucleus	26.97	3.38
GSMUA_Achr2P06000_001	Banana	cytosol	16.85	3.16
GSMUA_Achr1P08830_001	Banana	cytosol	31.46	2.89
GSMUA_Achr9P23740_001	Banana	golgi	31.46	2.67
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	3.37	0.81
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	0.0	0.0
GSMUA_Achr8P10210_001	Banana	cytosol	0.0	0.0
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G10200_001
EnsemblPlants:GSMUA_Achr8P10200_001	EnsemblPlants:GSMUA_Achr8T10200_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TP73
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19923	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00029608E0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

Putative Protein pleiotropic regulatory locus 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G10200_001]

Coordinates

chr8:+:7284044..7285517

Molecular Weight (calculated)

9821.9 Da

IEP (calculated)

10.327

GRAVY (calculated)

-0.206

Length

89 amino acids

Sequence
(BLAST)

1: MVMALSGHDN TVCSVFARPT DPQVVTGSHD TTIKFWDLVA GKTMTTVTHH KKSVRAMALH PKERAFASAS ADNIKKFNLP KGEFLHNML

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.