Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046930_P001 | Maize | cytosol, extracellular, plasma membrane | 80.43 | 79.45 |
| Zm00001d036709_P001 | Maize | cytosol | 79.81 | 78.83 |
| VIT_05s0094g00800.t01 | Wine grape | cytosol | 84.16 | 78.78 |
| EER90141 | Sorghum | plastid | 82.92 | 77.84 |
| KRH06660 | Soybean | nucleus | 82.61 | 77.1 |
| KRG94875 | Soybean | nucleus | 82.61 | 77.1 |
| Os06t0653800-01 | Rice | nucleus | 81.68 | 76.68 |
| TraesCS7D01G486800.1 | Wheat | cytosol, plastid | 81.37 | 75.72 |
| TraesCS7A01G499900.1 | Wheat | nucleus | 81.37 | 75.72 |
| TraesCS7B01G406900.1 | Wheat | cytosol, plastid | 81.06 | 75.43 |
| HORVU7Hr1G111780.2 | Barley | cytosol, plastid | 81.06 | 75.43 |
| Bra003387.1-P | Field mustard | cytosol | 78.57 | 75.3 |
| Solyc03g059100.1.1 | Tomato | nucleus | 75.78 | 74.85 |
| PGSC0003DMT400067694 | Potato | cytosol | 78.57 | 74.41 |
| AT2G43770.1 | Thale cress | cytosol | 78.57 | 73.76 |
| CDX67810 | Canola | cytosol | 79.5 | 71.31 |
| Bra004783.1-P | Field mustard | cytosol, golgi | 77.33 | 60.0 |
| CDX79802 | Canola | cytosol, golgi | 77.33 | 60.0 |
| CDY17912 | Canola | cytosol, golgi | 77.64 | 59.95 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 77.95 | 56.66 |
| GSMUA_Achr2P08580_001 | Banana | cytosol | 22.98 | 26.06 |
| GSMUA_Achr7P01850_001 | Banana | plastid | 18.01 | 24.79 |
| GSMUA_Achr4P10720_001 | Banana | cytosol, plastid | 25.47 | 24.33 |
| GSMUA_Achr8P28660_001 | Banana | cytosol | 23.6 | 22.55 |
| GSMUA_Achr6P13100_001 | Banana | cytosol | 20.81 | 22.04 |
| GSMUA_Achr11P... | Banana | cytosol | 20.5 | 19.13 |
| GSMUA_Achr3P29050_001 | Banana | nucleus | 24.84 | 16.74 |
| GSMUA_Achr2P06000_001 | Banana | cytosol | 22.98 | 15.61 |
| GSMUA_Achr8P10200_001 | Banana | cytosol | 4.04 | 14.61 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 18.94 | 12.9 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 16.46 | 10.91 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 3.11 | 10.64 |
| GSMUA_Achr8P10190_001 | Banana | cytosol, plastid | 9.01 | 10.51 |
| GSMUA_Achr4P29380_001 | Banana | nucleus | 19.88 | 9.0 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 19.88 | 8.07 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 20.5 | 6.82 |
| GSMUA_Achr8P10210_001 | Banana | cytosol | 1.86 | 6.32 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 19.25 | 5.92 |
| GSMUA_Achr3P27200_001 | Banana | golgi, plasma membrane, vacuole | 3.42 | 2.96 |
Protein Annotations
| MapMan:16.4.1.4.3 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSMUA_Achr3G04370_001 | EnsemblPlants:GSMUA_Achr3P04370_001 | EnsemblPlants:GSMUA_Achr3T04370_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M0SBQ5 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR44006 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002968E43 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
Putative U5 small nuclear ribonucleoprotein 40 kDa protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G04370_001]
Coordinates
chr3:-:2825398..2826707
Molecular Weight (calculated)
35510.4 Da
IEP (calculated)
7.857
GRAVY (calculated)
-0.380
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MFAAPGDNAL VISGPRPGTE WATVPHSSLQ VQAPGPGGKQ RTSSLESPIM LLTGHQSAIY TMKFNPAGTV IASGSHDKDI FLWYVHGECK NFMVLRGHKN
101: AVLDLQWTTD GTQIISASPD KTLRAWDVES GKQVKKMAEH SSFVNSCCPS RRGPPLVVSG SDDGTAKLWD LHKIFTGGLD NDVKVWDLRR NEVTMTLQGH
201: SDMITGMQLS PDGSYLLTNG MDCTLRVWDM RPYAPQNRCI KIFTGHQHNF EKNLMKCGWS PDGSKVTAGS ADRMVYIWDT TTRRILYKLP GHNGSVNETM
301: FHPTEPIIGS CGSDKQIYLG EI
101: AVLDLQWTTD GTQIISASPD KTLRAWDVES GKQVKKMAEH SSFVNSCCPS RRGPPLVVSG SDDGTAKLWD LHKIFTGGLD NDVKVWDLRR NEVTMTLQGH
201: SDMITGMQLS PDGSYLLTNG MDCTLRVWDM RPYAPQNRCI KIFTGHQHNF EKNLMKCGWS PDGSKVTAGS ADRMVYIWDT TTRRILYKLP GHNGSVNETM
301: FHPTEPIIGS CGSDKQIYLG EI
001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI
Arabidopsis Description
At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.