Factsheet for GSMUA_Achr9P23740_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27210_001	Banana	golgi	38.93	86.26
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	61.35	81.08
VIT_10s0071g01150.t01	Wine grape	cytosol	50.67	66.62
KRG93160	Soybean	cytosol	47.14	65.09
KRH56498	Soybean	cytosol	46.76	64.56
Solyc02g021360.2.1	Tomato	cytosol	46.47	61.03
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	20.23	57.14
PGSC0003DMT400065114	Potato	cytosol	44.18	57.09
Solyc04g008720.2.1	Tomato	cytosol	43.89	56.79
CDX88026	Canola	cytosol	42.56	53.8
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	42.84	53.64
CDY60225	Canola	cytosol	41.32	51.86
Zm00001d026621_P006	Maize	cytosol	44.85	51.65
CDX80363	Canola	cytosol	41.79	51.53
KXG27434	Sorghum	cytosol	45.23	51.52
AT5G08390.1	Thale cress	cytosol	41.22	51.49
TraesCS2D01G561900.1	Wheat	cytosol	45.42	51.46
TraesCS2A01G592600.1	Wheat	cytosol	45.42	51.46
CDX81101	Canola	cytosol	41.13	51.25
TraesCS2B01G591600.2	Wheat	cytosol	44.75	51.15
Zm00001d001828_P033	Maize	cytosol	44.85	50.98
Bra005990.1-P	Field mustard	cytosol	40.84	50.47
Os04t0677700-00	Rice	cytosol	41.98	49.44
Bra009683.1-P	Field mustard	cytosol	41.79	48.34
GSMUA_Achr1P08830_001	Banana	cytosol	35.02	37.91
GSMUA_Achr8P10200_001	Banana	cytosol	2.67	31.46
GSMUA_Achr8P28660_001	Banana	cytosol	6.58	20.47
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	6.49	20.18
GSMUA_Achr7P01850_001	Banana	plastid	4.39	19.66
GSMUA_Achr3P04370_001	Banana	cytosol	5.92	19.25
GSMUA_Achr2P08580_001	Banana	cytosol	5.15	19.01
GSMUA_Achr8P10210_001	Banana	cytosol	1.72	18.95
GSMUA_Achr11P...	Banana	cytosol	6.11	18.55
GSMUA_Achr6P13100_001	Banana	cytosol	5.15	17.76
GSMUA_Achr3P29050_001	Banana	nucleus	7.35	16.11
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	7.35	15.84
GSMUA_Achr2P06000_001	Banana	cytosol	6.58	14.56
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	1.24	13.83
GSMUA_Achr4P29380_001	Banana	nucleus	8.78	12.94
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	2.19	8.33

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0051013	EnsemblPlantsGene:GSMUA_Achr9G23740_001	EnsemblPlants:GSMUA_Achr9P23740_001	EnsemblPlants:GSMUA_Achr9T23740_001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	UniProt:M0U2Y1	HAMAP:MF_03022
PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00029556A8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Putative Katanin p80 WD40 repeat-containing subunit B1 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G23740_001]

Coordinates

chr9:+:28582554..28594545

Molecular Weight (calculated)

116358.0 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.058

Length

1048 amino acids

Sequence
(BLAST)

0001: MATTKRAYKL RILLLLLVNL EEFVAHSSNV NCLKIGRKTS RVLVTGGDDN KVNIWAIGKP NAIMSLSGHM SAVESVSFDS SEVLVAAGAA SGSIKLWDLE
0101: EAKIIRTLTG HRSNCIAVDF HPFGEFFASG SLDTNLKIWD MRRKGCIHTY KGHTRGVNAI KFTPDGRWVV SGGEDNIVKL WDLTAGKLLH DFKLHEGQIQ
0201: CIDFHPNEFL LATGSADRTV KFWDLETFEL IGSAGPEKES IQYNLSSTSG VRSMTFNPDG RTLLCGLHES LKIFSWEPIR CHDAVDVGWS RLSDMNIHEG
0301: KLLGCSYNQS CVGVWVVDLS RIEPYAIASA VITNGHSELK STSSGNLSLQ ADNNIKSSMG RLSISQSSEP NSKETKQVAS ATVVPGTPQR IATSVGQKAT
0401: TITTAPVVTS VKRSSSKAQA TTNLPTINKS EIIPVVVPRT SPRFELSSDS TKSTGVGRTV PYDIQSKFAN FQKVSNIRDD SDKSDMSVQS VGTEHNELLE
0501: QTAISSCNAV TQPVIAGENN LNDIKRVRTR RLGANLFRES SANYDQENCK SESYSTHRSY VPFLPGINPT HNFVWSKSSQ EERSTIILVF HKWHCMVNIM
0601: MLHVPCIGLN SLCYNTEEIY QFIIRVHKPK EACSFDVPKG GRTKSLVANW ERRERSPTYD GPRLSSSSET MAGANSLYSL RGHNRIAEKE IVPAASDEDA
0701: ISFVLEKHDQ FLNVAQSRLT KLQIELPLVG PNSIWQIQIQ ISYEEKYMLL STTIIAMFTV QSPFIFLPDL DLINLIRLIS PILLIRPLAN PYPNSDLVIY
0801: DCTPTLLSLF GHRSCYKLIC QPPCYDYITQ QAIDMAIGNM VTVATRPTCH MILHKIILNA MEHLCFLTTE VKLISYIIDG TPQLFFSLML GTLIVSLFMY
0901: NLQIVYRLWE RNDIKGVISA IEKMSDHAVS ADVLSSLMDK SDIITLDICT ALLPLLASLL ESKMDRHLGI SLEMLLKLVR IFGPVISSTL SAGPSVGVDL
1001: QAEQRLERCN LCFIELEKVK HRISLLIRRG GSIAKSAKEL NLALQNML

Best Arabidopsis Sequence Match ( AT5G23430.2 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.