Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80363 | Canola | cytosol | 96.98 | 94.59 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 90.95 | 90.08 |
| Bra009683.1-P | Field mustard | cytosol | 97.23 | 88.96 |
| CDX81101 | Canola | cytosol | 75.75 | 74.67 |
| CDY60225 | Canola | cytosol | 74.67 | 74.13 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 36.55 | 64.06 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 60.43 | 62.86 |
| KRG93160 | Soybean | cytosol | 57.3 | 62.58 |
| KRH56498 | Soybean | cytosol | 57.06 | 62.32 |
| Solyc02g021360.2.1 | Tomato | cytosol | 58.02 | 60.28 |
| CDY54233 | Canola | golgi | 13.03 | 58.06 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 53.2 | 55.61 |
| PGSC0003DMT400065114 | Potato | cytosol | 54.04 | 55.24 |
| Solyc04g008720.2.1 | Tomato | cytosol | 53.92 | 55.19 |
| KXG27434 | Sorghum | cytosol | 51.87 | 46.74 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 51.99 | 46.59 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 51.87 | 46.49 |
| Zm00001d026621_P006 | Maize | cytosol | 51.03 | 46.48 |
| Zm00001d001828_P033 | Maize | cytosol | 51.15 | 45.99 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 50.78 | 45.91 |
| Os04t0677700-00 | Rice | cytosol | 47.41 | 44.16 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 53.8 | 42.56 |
| CDY34658 | Canola | mitochondrion | 37.88 | 40.99 |
| CDY34846 | Canola | nucleus | 37.39 | 33.99 |
| CDY52222 | Canola | cytosol | 39.81 | 29.41 |
| CDY03812 | Canola | cytosol | 39.69 | 29.3 |
| CDY15006 | Canola | cytosol | 35.22 | 28.8 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 9.53 | 25.08 |
| CDX86957 | Canola | cytosol | 9.41 | 25.0 |
| CDX70436 | Canola | plastid | 4.34 | 21.56 |
| CDX97287 | Canola | cytosol | 8.44 | 21.47 |
| CDX91316 | Canola | cytosol | 8.44 | 21.47 |
| CDX67810 | Canola | cytosol | 9.17 | 21.17 |
| CDX72090 | Canola | mitochondrion | 7.84 | 19.46 |
| CDX79802 | Canola | cytosol, golgi | 9.29 | 18.55 |
| CDY17912 | Canola | cytosol, golgi | 9.29 | 18.47 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 6.63 | 17.24 |
| CDY36678 | Canola | cytosol | 7.96 | 16.97 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 9.05 | 16.93 |
| CDY08856 | Canola | cytosol | 6.03 | 16.84 |
| CDX72834 | Canola | cytosol | 8.08 | 16.83 |
| CDX68298 | Canola | cytosol | 7.84 | 16.71 |
| CDX84544 | Canola | cytosol | 6.03 | 16.67 |
| CDX96351 | Canola | cytosol | 7.96 | 16.54 |
| CDY09645 | Canola | cytosol | 9.29 | 16.28 |
| CDY27046 | Canola | cytosol | 9.29 | 16.18 |
| CDX96156 | Canola | cytosol | 9.29 | 16.18 |
| CDX84790 | Canola | cytosol | 9.29 | 16.18 |
| CDY52843 | Canola | nucleus | 4.46 | 15.95 |
| CDY27174 | Canola | cytosol | 2.9 | 15.69 |
| CDY44171 | Canola | cytosol | 2.9 | 15.48 |
| CDY09730 | Canola | cytosol | 8.93 | 15.38 |
| CDX90556 | Canola | cytosol | 8.93 | 15.38 |
| CDY05801 | Canola | cytosol | 8.93 | 14.74 |
| CDY34965 | Canola | cytosol | 8.32 | 14.68 |
| CDY28352 | Canola | cytosol | 8.44 | 14.68 |
| CDX98931 | Canola | nucleus | 8.32 | 14.38 |
| CDX70097 | Canola | cytosol | 7.96 | 14.29 |
| CDX91118 | Canola | nucleus | 11.1 | 14.29 |
| CDX85646 | Canola | nucleus | 11.1 | 14.22 |
| CDX70506 | Canola | nucleus | 10.74 | 14.15 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.69 | 14.14 |
| CDY08014 | Canola | mitochondrion | 1.69 | 13.73 |
| CDX78524 | Canola | nucleus | 10.98 | 13.62 |
| CDY05802 | Canola | mitochondrion | 9.29 | 13.39 |
| CDY01533 | Canola | plastid | 1.21 | 6.33 |
| CDY69403 | Canola | nucleus | 0.48 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078DFL8 | EnsemblPlants:CDX88026 | ProteinID:CDX88026 | ProteinID:CDX88026.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00147434001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EEB759 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaA06g26170D
Coordinates
chrLK031854:-:174030..179338
Molecular Weight (calculated)
90693.1 Da
IEP (calculated)
8.841
GRAVY (calculated)
-0.474
Length
829 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTKRAYKL QEFVAHSAAV NCLKIGRKSS RVLVTGGEDH KVNLWAIGKP NAILSLYGHS SGIDSVTFDA SEVLVAAGAA SGTIKLWDLE EAKLVRTLTG
101: HRSNCISVDF HPFGEFFASG SLDTNLKIWD LRKKGPIHTY KGHTRGVNVL RFTPDGRWVV SGGEDNIVKV WDLTAGKLLT EFKCHEGQIQ SLDFHPHEFL
201: LATGSADRTV KFWDLETFEL IGSGGPETSG VRCLSFNPDG KTVLCGLQES LKIFSWEPIR CHDGVDVGWS RLSDMNVHEG KLLGCSYNQN CVGVWVVDLS
301: RTEPCNTGDA AQSNGQPEKK SGSGRDSVVL NDNNSKTTIP GKLSVSQNVD PLLKETKSLG RLSVTQNSDP STKETKAVGR SSTSHSSESK PLGRLSVSQN
401: SDVAKESRTL SSTGSVPNTP HRVSLTSVSK AAVSNAATSR RNFTKANPKG NPVNKAADFI QVFVPREDPR VEQATESRAE LDIIARTMPY SLQAADSRRS
501: PPSSKNNQDL PNAPVLEMSE SQPVEPSNIP DKSTFPGGKG GMRGAAERSI NDFRYKRYGR SNSRSRMGSP PRNHDENYDL VSHKSSREPS PTESRKGGRF
601: QSLVINRERR GRFSNYDGPV SNFPGGNAAA PNIHPSNMFK QRGNHMPVEQ GIESPSEDNI VEDIMGKHDQ FVSSMQSRLA KLQVVRRYWE RNDVKNTIGS
701: MEKMADNAVT ADVLSIIIAR NEIMTLDTCT SLLPILAALL ASDMDQHLSV SLDMLLKLVR MYGSPIYSSL SAPASVGVDI EAEQRIERYS RCFVELEKVK
801: ACLPSLSRRG GLVAKSVLEL NLAFQEVSS
101: HRSNCISVDF HPFGEFFASG SLDTNLKIWD LRKKGPIHTY KGHTRGVNVL RFTPDGRWVV SGGEDNIVKV WDLTAGKLLT EFKCHEGQIQ SLDFHPHEFL
201: LATGSADRTV KFWDLETFEL IGSGGPETSG VRCLSFNPDG KTVLCGLQES LKIFSWEPIR CHDGVDVGWS RLSDMNVHEG KLLGCSYNQN CVGVWVVDLS
301: RTEPCNTGDA AQSNGQPEKK SGSGRDSVVL NDNNSKTTIP GKLSVSQNVD PLLKETKSLG RLSVTQNSDP STKETKAVGR SSTSHSSESK PLGRLSVSQN
401: SDVAKESRTL SSTGSVPNTP HRVSLTSVSK AAVSNAATSR RNFTKANPKG NPVNKAADFI QVFVPREDPR VEQATESRAE LDIIARTMPY SLQAADSRRS
501: PPSSKNNQDL PNAPVLEMSE SQPVEPSNIP DKSTFPGGKG GMRGAAERSI NDFRYKRYGR SNSRSRMGSP PRNHDENYDL VSHKSSREPS PTESRKGGRF
601: QSLVINRERR GRFSNYDGPV SNFPGGNAAA PNIHPSNMFK QRGNHMPVEQ GIESPSEDNI VEDIMGKHDQ FVSSMQSRLA KLQVVRRYWE RNDVKNTIGS
701: MEKMADNAVT ADVLSIIIAR NEIMTLDTCT SLLPILAALL ASDMDQHLSV SLDMLLKLVR MYGSPIYSSL SAPASVGVDI EAEQRIERYS RCFVELEKVK
801: ACLPSLSRRG GLVAKSVLEL NLAFQEVSS
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.