Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031445.1-P | Field mustard | cytosol | 96.97 | 97.06 |
| CDY52222 | Canola | cytosol | 96.79 | 96.88 |
| CDY15006 | Canola | cytosol | 79.52 | 88.07 |
| AT1G61210.1 | Thale cress | cytosol | 80.94 | 76.97 |
| CDY34658 | Canola | mitochondrion | 47.64 | 69.84 |
| CDY54233 | Canola | golgi | 11.49 | 69.35 |
| CDY34846 | Canola | nucleus | 55.12 | 67.87 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.5 | 61.42 |
| KRH20528 | Soybean | cytosol | 39.27 | 56.68 |
| KRH49977 | Soybean | cytosol | 33.21 | 54.45 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 14.16 | 46.9 |
| Solyc02g078800.2.1 | Tomato | extracellular | 41.76 | 45.58 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 32.41 | 43.96 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 32.41 | 43.8 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 32.32 | 43.68 |
| Os01t0780400-02 | Rice | cytosol | 32.15 | 43.08 |
| Zm00001d012620_P025 | Maize | cytosol | 31.7 | 42.69 |
| OQU87670 | Sorghum | cytosol | 31.52 | 42.55 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 35.35 | 41.01 |
| CDX88026 | Canola | cytosol | 29.3 | 39.69 |
| CDY60225 | Canola | cytosol | 29.47 | 39.64 |
| CDX81101 | Canola | cytosol | 29.56 | 39.48 |
| CDX80363 | Canola | cytosol | 29.03 | 38.35 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 32.32 | 37.62 |
| PGSC0003DMT400057760 | Potato | cytosol | 22.53 | 31.82 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 6.32 | 22.54 |
| CDX72090 | Canola | mitochondrion | 6.68 | 22.46 |
| CDX86957 | Canola | cytosol | 6.23 | 22.44 |
| CDX91316 | Canola | cytosol | 5.97 | 20.55 |
| CDX67810 | Canola | cytosol | 6.5 | 20.33 |
| CDX97287 | Canola | cytosol | 5.88 | 20.25 |
| CDX70436 | Canola | plastid | 2.94 | 19.76 |
| CDY44171 | Canola | cytosol | 2.67 | 19.35 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 5.43 | 19.12 |
| CDY27174 | Canola | cytosol | 2.49 | 18.3 |
| CDX84544 | Canola | cytosol | 4.81 | 18.0 |
| CDY08856 | Canola | cytosol | 4.72 | 17.85 |
| CDX79802 | Canola | cytosol, golgi | 6.5 | 17.59 |
| CDY17912 | Canola | cytosol, golgi | 6.5 | 17.51 |
| CDX90556 | Canola | cytosol | 7.39 | 17.26 |
| CDY09730 | Canola | cytosol | 7.39 | 17.26 |
| CDX68298 | Canola | cytosol | 5.88 | 16.97 |
| CDY36678 | Canola | cytosol | 5.88 | 16.97 |
| CDX72834 | Canola | cytosol | 5.97 | 16.83 |
| CDY34965 | Canola | cytosol | 6.95 | 16.6 |
| CDY28352 | Canola | cytosol | 7.03 | 16.56 |
| CDX96351 | Canola | cytosol | 5.88 | 16.54 |
| CDY09645 | Canola | cytosol | 6.95 | 16.49 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 6.5 | 16.48 |
| CDX84790 | Canola | cytosol | 6.95 | 16.39 |
| CDX96156 | Canola | cytosol | 6.95 | 16.39 |
| CDY27046 | Canola | cytosol | 6.95 | 16.39 |
| CDX98931 | Canola | nucleus | 6.77 | 15.83 |
| CDX70097 | Canola | cytosol | 6.41 | 15.58 |
| CDY52843 | Canola | nucleus | 3.21 | 15.52 |
| CDY05801 | Canola | cytosol | 6.68 | 14.94 |
| CDY08014 | Canola | mitochondrion | 1.34 | 14.71 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.25 | 14.14 |
| CDX91118 | Canola | nucleus | 7.84 | 13.66 |
| CDY05802 | Canola | mitochondrion | 6.86 | 13.39 |
| CDX70506 | Canola | nucleus | 7.39 | 13.2 |
| CDX85646 | Canola | nucleus | 7.57 | 13.14 |
| CDX78524 | Canola | nucleus | 7.48 | 12.57 |
| CDY01533 | Canola | plastid | 0.62 | 4.43 |
| CDY69403 | Canola | nucleus | 0.36 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078ERZ2 | EnsemblPlants:CDY03812 | ProteinID:CDY03812 | ProteinID:CDY03812.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00117243001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EB8CE0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC01g29290D
Coordinates
chrLK031946:+:795494..802472
Molecular Weight (calculated)
122627.0 Da
IEP (calculated)
7.187
GRAVY (calculated)
-0.462
Length
1123 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSLAFDSAE VLVLGGASSG LIKLWDLEEA KMVRAFTGHR
0101: SSCSAVEFHP FGEFLASGSN DTNLKIWDIR KKGCIQTYKG HTRDINTIKF SPDGRWVVTG GLDNAVKVWD LTAGKLIHDF KFHEGSIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEDTGVR SIKFHPDGRT LFCGLDDGLK VYSWEPVVCH DSVDMGWSTL GDLCISEGKL MGCSYYQNSV GIWVSDISQI
0301: EPYGIGSVDK KECVEKVLSV LDDQSSERVK NGLRRSSSPD YETKEIKNIY IDCGNSTVAD KPGSLSTSKV NATSTGQLGD KSFIVHGDTG KDSSDSGKES
0401: ITFSKTKPGM LLRPAHVRKT PTKQSVAVQS STPKQSGSDG EKTLDTKTVL DSEGSGRKPF DASDSIIKSI TSKFEKALFP ESPTDEAKSL LLKPPLVQRS
0501: PNTKYNEKRW AVSVDSENLD SHQSGLEESR DADLPKELAD DRGCNPTEED ASDAIILSKP ERVLTPEKAG DEQKGVESPG GSKESDSVKV VRGVKVVSGR
0601: TRSLVERFER RETITPSEEE DKAAIAATVQ STNSVEEEAK SASTPAVSTT PTQVMPVKLD EATNLTTVEA PVVATRRPRS IPARVMPVVL GRDTNMSTDV
0701: PSVTLTGPDR TPAANLTSDE SSVTSTRQSR SSPSPVMPVV LNQTTKMKSD DPPVTSTRPD RSSAANLTSD ESPVSSTRQA TSPAPVTPLI LNRSRSTNMK
0801: PDEPHVIPRR PLRSSSTRIR PVMLNQTTKT HDERPVQSTR SARTSPARVI PMKLSQADDI PSYEPPVALT RSARNSPVRA IPSKINQANN VTSDASHIRS
0901: RHRFSPTQTL ATASVIDQVA DMTLDEAHIA QTQPDYDISN QKEEPRISER ENEDDVSETL MQTHNEVLNT LQSRLTKLQI VRHFWVRNDI KGAIMALKKL
1001: SDPSVQADVI SILTDKPEIL TLDLFSQLAP VLTGLLGSRT ERPVSVSLEM LLKLVAVFGA VVQSNVSARR SVGVDLHAEE RLQICQSCSA ELQKVQKILP
1101: LLTRRGGLIA RKAQELNLVL QTP
0101: SSCSAVEFHP FGEFLASGSN DTNLKIWDIR KKGCIQTYKG HTRDINTIKF SPDGRWVVTG GLDNAVKVWD LTAGKLIHDF KFHEGSIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEDTGVR SIKFHPDGRT LFCGLDDGLK VYSWEPVVCH DSVDMGWSTL GDLCISEGKL MGCSYYQNSV GIWVSDISQI
0301: EPYGIGSVDK KECVEKVLSV LDDQSSERVK NGLRRSSSPD YETKEIKNIY IDCGNSTVAD KPGSLSTSKV NATSTGQLGD KSFIVHGDTG KDSSDSGKES
0401: ITFSKTKPGM LLRPAHVRKT PTKQSVAVQS STPKQSGSDG EKTLDTKTVL DSEGSGRKPF DASDSIIKSI TSKFEKALFP ESPTDEAKSL LLKPPLVQRS
0501: PNTKYNEKRW AVSVDSENLD SHQSGLEESR DADLPKELAD DRGCNPTEED ASDAIILSKP ERVLTPEKAG DEQKGVESPG GSKESDSVKV VRGVKVVSGR
0601: TRSLVERFER RETITPSEEE DKAAIAATVQ STNSVEEEAK SASTPAVSTT PTQVMPVKLD EATNLTTVEA PVVATRRPRS IPARVMPVVL GRDTNMSTDV
0701: PSVTLTGPDR TPAANLTSDE SSVTSTRQSR SSPSPVMPVV LNQTTKMKSD DPPVTSTRPD RSSAANLTSD ESPVSSTRQA TSPAPVTPLI LNRSRSTNMK
0801: PDEPHVIPRR PLRSSSTRIR PVMLNQTTKT HDERPVQSTR SARTSPARVI PMKLSQADDI PSYEPPVALT RSARNSPVRA IPSKINQANN VTSDASHIRS
0901: RHRFSPTQTL ATASVIDQVA DMTLDEAHIA QTQPDYDISN QKEEPRISER ENEDDVSETL MQTHNEVLNT LQSRLTKLQI VRHFWVRNDI KGAIMALKKL
1001: SDPSVQADVI SILTDKPEIL TLDLFSQLAP VLTGLLGSRT ERPVSVSLEM LLKLVAVFGA VVQSNVSARR SVGVDLHAEE RLQICQSCSA ELQKVQKILP
1101: LLTRRGGLIA RKAQELNLVL QTP
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDVSGVT SKRQTRTSPA PVMPMILNQT TKMKSDEPSI TSTWPDRTSA TDLTSDVSGV ISSRQTRTSP APVMPMKLNQ
0801: KTKIKSDEPP ITSTRPDRPS ATNLTSDESP VTSTRQAKTS PAPVTPVILN QRQTTNMKSD EPPVISTRPL RTSSARVMPV ILNQASTTYD ERPLSSSRSA
0901: RTSPARIMPM KLNQADNMPS YEPPVALTRS ARNSPARVIP VKLNQATNVT ADASHIRSRQ RFSPTQTLAT PAVFDQVTDM TLDETTKTQQ SSDILTQKEE
1001: PQISGREDDG DIWEILMRTH SEVLNTLQSR LTKLQIVRHF WERSDIKGAI AALRKLSDHS VQADVINILT DKTEILTLDL FSQLAPVLTG LLGSKTERPV
1101: NVSLEMLLKL VAVFGTVIQS TVSARRVVGV DLHAEERLQI CQSCSAELQK VQKILPLLTR RGGLIARKAQ ELNLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDVSGVT SKRQTRTSPA PVMPMILNQT TKMKSDEPSI TSTWPDRTSA TDLTSDVSGV ISSRQTRTSP APVMPMKLNQ
0801: KTKIKSDEPP ITSTRPDRPS ATNLTSDESP VTSTRQAKTS PAPVTPVILN QRQTTNMKSD EPPVISTRPL RTSSARVMPV ILNQASTTYD ERPLSSSRSA
0901: RTSPARIMPM KLNQADNMPS YEPPVALTRS ARNSPARVIP VKLNQATNVT ADASHIRSRQ RFSPTQTLAT PAVFDQVTDM TLDETTKTQQ SSDILTQKEE
1001: PQISGREDDG DIWEILMRTH SEVLNTLQSR LTKLQIVRHF WERSDIKGAI AALRKLSDHS VQADVINILT DKTEILTLDL FSQLAPVLTG LLGSKTERPV
1101: NVSLEMLLKL VAVFGTVIQS TVSARRVVGV DLHAEERLQI CQSCSAELQK VQKILPLLTR RGGLIARKAQ ELNLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.