Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018529.1-P | Field mustard | cytosol | 97.01 | 49.69 |
| CDX91316 | Canola | cytosol | 97.01 | 49.69 |
| CDX97287 | Canola | cytosol | 96.41 | 49.39 |
| AT4G02730.1 | Thale cress | cytosol | 86.83 | 43.54 |
| KRH71413 | Soybean | nucleus | 63.47 | 33.12 |
| VIT_07s0151g00960.t01 | Wine grape | cytosol | 61.68 | 32.7 |
| KRH32024 | Soybean | cytosol | 60.48 | 31.66 |
| Solyc09g065290.2.1 | Tomato | cytosol, plastid | 58.68 | 31.11 |
| PGSC0003DMT400049837 | Potato | cytosol, plastid | 57.48 | 30.48 |
| TraesCS2B01G224500.1 | Wheat | plastid | 49.7 | 25.0 |
| TraesCS2A01G196900.1 | Wheat | plastid | 49.1 | 24.77 |
| KXG36525 | Sorghum | plastid | 48.5 | 24.62 |
| Zm00001d021868_P001 | Maize | plastid | 47.31 | 24.09 |
| CDX86957 | Canola | cytosol | 44.31 | 23.72 |
| Os07t0572000-01 | Rice | plastid | 47.9 | 23.67 |
| GSMUA_Achr7P01850_001 | Banana | plastid | 32.93 | 23.5 |
| Zm00001d021866_P001 | Maize | plastid | 46.11 | 23.48 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 43.11 | 22.86 |
| TraesCS2D01G204900.1 | Wheat | cytosol, plastid | 48.5 | 22.44 |
| HORVU2Hr1G041020.2 | Barley | cytosol, plastid | 47.9 | 22.22 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 10.78 | 18.18 |
| CDY08014 | Canola | mitochondrion | 10.78 | 17.65 |
| CDY52843 | Canola | nucleus | 22.16 | 15.95 |
| CDX67810 | Canola | cytosol | 28.74 | 13.37 |
| CDY08856 | Canola | cytosol | 23.35 | 13.13 |
| CDX84544 | Canola | cytosol | 23.35 | 13.0 |
| CDX79802 | Canola | cytosol, golgi | 26.95 | 10.84 |
| CDY17912 | Canola | cytosol, golgi | 26.95 | 10.79 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 27.54 | 10.38 |
| CDX72090 | Canola | mitochondrion | 19.16 | 9.58 |
| CDX96351 | Canola | cytosol | 22.75 | 9.52 |
| CDX72834 | Canola | cytosol | 22.16 | 9.3 |
| CDX68298 | Canola | cytosol | 20.36 | 8.74 |
| CDY36678 | Canola | cytosol | 20.36 | 8.74 |
| CDX98931 | Canola | nucleus | 23.95 | 8.33 |
| CDX96156 | Canola | cytosol | 23.35 | 8.19 |
| CDX84790 | Canola | cytosol | 22.75 | 7.98 |
| CDY27046 | Canola | cytosol | 22.75 | 7.98 |
| CDY09645 | Canola | cytosol | 22.16 | 7.82 |
| CDX90556 | Canola | cytosol | 22.16 | 7.69 |
| CDY09730 | Canola | cytosol | 22.16 | 7.69 |
| CDY34965 | Canola | cytosol | 21.56 | 7.66 |
| CDY54233 | Canola | golgi | 8.38 | 7.53 |
| CDX70097 | Canola | cytosol | 19.76 | 7.14 |
| CDY28352 | Canola | cytosol | 20.36 | 7.13 |
| CDY05801 | Canola | cytosol | 19.16 | 6.37 |
| CDY01533 | Canola | plastid | 5.99 | 6.33 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 11.98 | 6.27 |
| CDY05802 | Canola | mitochondrion | 19.16 | 5.57 |
| CDX70506 | Canola | nucleus | 19.76 | 5.25 |
| CDX91118 | Canola | nucleus | 19.76 | 5.12 |
| CDX85646 | Canola | nucleus | 19.76 | 5.1 |
| CDX78524 | Canola | nucleus | 19.76 | 4.94 |
| CDY60225 | Canola | cytosol | 22.16 | 4.43 |
| CDX81101 | Canola | cytosol | 22.16 | 4.4 |
| CDX88026 | Canola | cytosol | 21.56 | 4.34 |
| CDX80363 | Canola | cytosol | 19.76 | 3.88 |
| CDY34658 | Canola | mitochondrion | 17.37 | 3.79 |
| CDY34846 | Canola | nucleus | 17.37 | 3.18 |
| CDY15006 | Canola | cytosol | 18.56 | 3.06 |
| CDY52222 | Canola | cytosol | 19.76 | 2.94 |
| CDY03812 | Canola | cytosol | 19.76 | 2.94 |
| CDY44171 | Canola | cytosol | 2.4 | 2.58 |
| CDY27174 | Canola | cytosol | 0.6 | 0.65 |
| CDY69403 | Canola | nucleus | 0.6 | 0.54 |
Protein Annotations
| MapMan:12.3.3.2.3 | Gene3D:2.130.10.10 | EnsemblPlants:CDX70436 | ProteinID:CDX70436 | ProteinID:CDX70436.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00140247001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR22847 | PANTHER:PTHR22847:SF602 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EC4C50 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
BnaC03g05200D
Coordinates
chrLK031791:+:400082..400585
Molecular Weight (calculated)
18439.8 Da
IEP (calculated)
8.365
GRAVY (calculated)
-0.223
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSGGNGVGN SAGTSGGSQT FKPYRHLKTL EGHTAAISCV KYSNEGNLLA SASLDKSMIL WSATNYSLIH RYEGHSSGVS DLAWSSDSHY TCSASDDCTL
101: RIWDARAPYE CLKVLRGHTN FVFCVNFNPP SNLIVSGSFD ETIRIWEVKT GRCVRVIKEF ILYLKYK
101: RIWDARAPYE CLKVLRGHTN FVFCVNFNPP SNLIVSGSFD ETIRIWEVKT GRCVRVIKEF ILYLKYK
001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA
Arabidopsis Description
WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.