Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003910.1-P | Field mustard | cytosol | 95.89 | 98.68 |
| CDY36678 | Canola | cytosol | 98.2 | 98.2 |
| CDX72834 | Canola | cytosol | 90.23 | 88.19 |
| CDX96351 | Canola | cytosol | 89.2 | 86.97 |
| AT1G71840.1 | Thale cress | nucleus | 88.17 | 84.28 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 65.55 | 65.22 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 65.04 | 64.38 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 62.47 | 61.21 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 62.21 | 60.96 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 59.13 | 58.82 |
| GSMUA_Achr11P... | Banana | cytosol | 51.41 | 57.97 |
| KRH37298 | Soybean | cytosol | 53.47 | 54.88 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 29.31 | 51.82 |
| Os03t0685600-01 | Rice | cytosol | 52.19 | 51.52 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 52.19 | 51.01 |
| KRH35009 | Soybean | cytosol | 17.99 | 50.72 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 50.64 | 50.0 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 50.13 | 49.49 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 50.39 | 49.37 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 50.13 | 49.24 |
| HORVU3Hr1G013230.4 | Barley | cytosol | 49.61 | 48.25 |
| Zm00001d041945_P003 | Maize | cytosol | 50.64 | 46.35 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 49.87 | 40.0 |
| Zm00001d011779_P005 | Maize | cytosol | 49.87 | 39.59 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 50.39 | 39.52 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 19.54 | 24.13 |
| CDX86957 | Canola | cytosol | 19.28 | 24.04 |
| CDX97287 | Canola | cytosol | 19.54 | 23.31 |
| CDX91316 | Canola | cytosol | 19.54 | 23.31 |
| HORVU5Hr1G075920.16 | Barley | nucleus | 39.07 | 20.68 |
| CDX70436 | Canola | plastid | 8.74 | 20.36 |
| CDX84544 | Canola | cytosol | 14.65 | 19.0 |
| CDY08856 | Canola | cytosol | 14.4 | 18.86 |
| CDX67810 | Canola | cytosol | 16.45 | 17.83 |
| CDY09645 | Canola | cytosol | 20.82 | 17.12 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 13.62 | 16.61 |
| CDX79802 | Canola | cytosol, golgi | 16.97 | 15.9 |
| CDY17912 | Canola | cytosol, golgi | 16.97 | 15.83 |
| CDX96156 | Canola | cytosol | 19.28 | 15.76 |
| CDX84790 | Canola | cytosol | 19.28 | 15.76 |
| CDY27046 | Canola | cytosol | 19.28 | 15.76 |
| CDY54233 | Canola | golgi | 7.46 | 15.59 |
| CDX72090 | Canola | mitochondrion | 13.37 | 15.57 |
| CDY52843 | Canola | nucleus | 9.25 | 15.52 |
| CDX98931 | Canola | nucleus | 18.51 | 15.0 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 16.2 | 14.22 |
| CDX70097 | Canola | cytosol | 16.45 | 13.85 |
| CDY05801 | Canola | cytosol | 17.74 | 13.74 |
| CDY44171 | Canola | cytosol | 5.4 | 13.55 |
| CDY08014 | Canola | mitochondrion | 3.34 | 12.75 |
| CDX90556 | Canola | cytosol | 15.42 | 12.47 |
| CDY09730 | Canola | cytosol | 15.42 | 12.47 |
| CDY05802 | Canola | mitochondrion | 17.99 | 12.17 |
| CDY34965 | Canola | cytosol | 14.65 | 12.13 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 3.08 | 12.12 |
| CDY27174 | Canola | cytosol | 4.63 | 11.76 |
| CDY28352 | Canola | cytosol | 13.88 | 11.32 |
| CDX91118 | Canola | nucleus | 17.99 | 10.87 |
| CDX85646 | Canola | nucleus | 17.74 | 10.66 |
| CDX70506 | Canola | nucleus | 17.22 | 10.65 |
| CDX78524 | Canola | nucleus | 17.48 | 10.18 |
| CDY34658 | Canola | mitochondrion | 19.02 | 9.66 |
| CDY60225 | Canola | cytosol | 17.48 | 8.14 |
| CDX81101 | Canola | cytosol | 17.48 | 8.09 |
| CDY34846 | Canola | nucleus | 18.51 | 7.89 |
| CDX80363 | Canola | cytosol | 17.22 | 7.88 |
| CDX88026 | Canola | cytosol | 16.71 | 7.84 |
| CDY15006 | Canola | cytosol | 16.2 | 6.21 |
| CDY52222 | Canola | cytosol | 17.22 | 5.97 |
| CDY03812 | Canola | cytosol | 16.97 | 5.88 |
| CDY01533 | Canola | plastid | 2.31 | 5.7 |
| CDY69403 | Canola | nucleus | 2.06 | 4.32 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX68298 | ProteinID:CDX68298 | ProteinID:CDX68298.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00099587001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19857 | PANTHER:PTHR19857:SF8 |
| InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SUPFAM:SSF50998 | UniParc:UPI0004EDE140 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | SEG:seg | : | : | : |
Description
BnaA07g23380D
Coordinates
chrLK031787:-:4884086..4886156
Molecular Weight (calculated)
41752.9 Da
IEP (calculated)
4.074
GRAVY (calculated)
-0.258
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRDMNNPA MEEEDEGDVF LGESDVLHEI DVDGEDLPDA FDEDDNDNDN EDEVFDENDD SVHTFTGHKG ELYALACSPL DPTLVATGGG DDKAFLWKIG
101: NGDWAAELPA HKDSVSSLAF SYDGQLLASG GLDGVVQIVD ASSGTLKCVL DGPGSGIEWV KWHPRGHIVL AGSEDCSMWM WNADKEAYLN MFSGHNQSVT
201: CGDFTPDGKL ICTGSDDASH PYHTEGLICL DINSNSSLAI SGSKDGSVHI VNIVTGKVVS SLSSHTESVE CVKFSPSSAT IPMAATGGMD KKLVIWDLQH
301: STPRFICEHA EGVTCVTWIG TSKYLATGCA DGTVSVWDSL LGNCVHTYHG HQDAVQSISV SANTEFIVSV SVDHTARVYD TSEFQNKME
101: NGDWAAELPA HKDSVSSLAF SYDGQLLASG GLDGVVQIVD ASSGTLKCVL DGPGSGIEWV KWHPRGHIVL AGSEDCSMWM WNADKEAYLN MFSGHNQSVT
201: CGDFTPDGKL ICTGSDDASH PYHTEGLICL DINSNSSLAI SGSKDGSVHI VNIVTGKVVS SLSSHTESVE CVKFSPSSAT IPMAATGGMD KKLVIWDLQH
301: STPRFICEHA EGVTCVTWIG TSKYLATGCA DGTVSVWDSL LGNCVHTYHG HQDAVQSISV SANTEFIVSV SVDHTARVYD TSEFQNKME
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.