CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27174	Canola	cytosol	30.85	94.77
CDX72090	Canola	mitochondrion	66.6	93.71
CDY28352	Canola	cytosol	91.91	90.57
Bra021188.1-P	Field mustard	cytosol	94.04	88.93
CDY09730	Canola	cytosol	81.49	79.63
CDX90556	Canola	cytosol	81.28	79.42
AT3G16650.1	Thale cress	cytosol	80.85	79.33
KRH12069	Soybean	nucleus	75.53	74.58
KRH37088	Soybean	nucleus	75.32	74.21
CDY44171	Canola	cytosol	24.47	74.19
VIT_05s0077g02310.t01	Wine grape	cytosol	74.89	72.73
CDY08856	Canola	cytosol	14.26	22.56
CDX84544	Canola	cytosol	14.26	22.33
CDX70436	Canola	plastid	7.66	21.56
CDX91316	Canola	cytosol	14.68	21.17
CDX97287	Canola	cytosol	14.68	21.17
CDX86957	Canola	cytosol	13.62	20.51
CDY00226	Canola	cytosol, nucleus, plastid	13.62	20.32
CDY52843	Canola	nucleus	9.79	19.83
CDY54233	Canola	golgi	7.23	18.28
CDX77842	Canola	cytosol, nucleus, peroxisome	3.83	18.18
CDY08014	Canola	mitochondrion	3.83	17.65
CDX67810	Canola	cytosol	13.19	17.27
CDY09645	Canola	cytosol	17.02	16.91
CDX72834	Canola	cytosol	13.83	16.33
CDX96351	Canola	cytosol	13.62	16.04
CDX84790	Canola	cytosol	15.96	15.76
CDY27046	Canola	cytosol	15.96	15.76
CDX96156	Canola	cytosol	15.74	15.55
CDX79802	Canola	cytosol, golgi	13.62	15.42
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	10.43	15.36
CDY17912	Canola	cytosol, golgi	13.62	15.35
CDX98931	Canola	nucleus	15.53	15.21
CDX70097	Canola	cytosol	14.89	15.15
CDX68298	Canola	cytosol	12.13	14.65
CDY36678	Canola	cytosol	11.91	14.4
CDX98392	Canola	endoplasmic reticulum, extracellular	13.19	14.0
CDY05801	Canola	cytosol	13.83	12.95
CDX70506	Canola	nucleus	15.32	11.45
CDY05802	Canola	mitochondrion	13.83	11.3
CDX91118	Canola	nucleus	15.32	11.18
CDX85646	Canola	nucleus	15.11	10.97
CDX78524	Canola	nucleus	15.32	10.78
CDY34658	Canola	mitochondrion	15.74	9.66
CDX81101	Canola	cytosol	14.89	8.32
CDX88026	Canola	cytosol	14.68	8.32
CDY60225	Canola	cytosol	14.47	8.14
CDY34846	Canola	nucleus	15.53	8.0
CDX80363	Canola	cytosol	14.04	7.76
CDY52222	Canola	cytosol	16.6	6.95
CDY03812	Canola	cytosol	16.6	6.95
CDY15006	Canola	cytosol	14.04	6.51
CDY69403	Canola	nucleus	2.55	6.49
CDY01533	Canola	plastid	2.13	6.33

Protein Annotations

MapMan:16.4.5.1.3	Gene3D:2.130.10.10	UniProt:A0A078H919	EnsemblPlants:CDY34965	ProteinID:CDY34965	ProteinID:CDY34965.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00057550001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19923	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEFA7A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaA01g27690DBnaA01g27690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H919]

Coordinates

chrLK032344:+:66560..70077

Molecular Weight (calculated)

52345.0 Da

IEP (calculated)

9.140

GRAVY (calculated)

-0.487

Length

470 amino acids

Sequence
(BLAST)

001: MTTEIEPQSL QNLSLKSVKR ALDLFSPAHD QLAPPDPESK KVRLSHKIQV AFGGVEPVSK KPIRRAEYNN EQIAPSNALP AGQEGAKEVQ KGVKEKALAV
101: FGPTLPPRTL NDNTVLPAFG SSSERNLSTS ALMERIPSRW PRPEWHAPWK YYRVIQGGHL GWVRSVAFDS SNDWFCTGSA DRTIKVWDVA SGVLKHTLTG
201: HIGQVRGLAV SNQHSYIFSA GDDKQVKCWD LEQNKVIRSY HGHLSGVYCL ALQPTLDVVL TGGRDSVCRV WDIRTKVQTF ALSGHDKDVC SVFTRPTDPQ
301: VVTGSHDSTI KFWDLRYGRT MATLTNHKKA VRAMALHPKE NAFVSASADN IKKFSLPKGE FRHNMLSQQR ATINAVAVNE DGVMVTGGDN GSLWFWDWKS
401: GHSFQQAETI VQPGSLESEA GIYAACYDQT GSRLVTCEAD KTIKMWKEDE NATPETHPLN FRPPKEIRRF

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.