Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031445.1-P | Field mustard | cytosol | 98.66 | 98.66 |
| CDY03812 | Canola | cytosol | 96.88 | 96.79 |
| CDY15006 | Canola | cytosol | 79.32 | 87.77 |
| AT1G61210.1 | Thale cress | cytosol | 80.93 | 76.88 |
| CDY34658 | Canola | mitochondrion | 48.04 | 70.37 |
| CDY54233 | Canola | golgi | 11.41 | 68.82 |
| CDY34846 | Canola | nucleus | 55.53 | 68.31 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 28.52 | 61.42 |
| KRH20528 | Soybean | cytosol | 39.3 | 56.68 |
| KRH49977 | Soybean | cytosol | 33.24 | 54.45 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 14.26 | 47.2 |
| Solyc02g078800.2.1 | Tomato | extracellular | 42.25 | 46.06 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 32.0 | 43.36 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 32.0 | 43.2 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 31.91 | 43.08 |
| Os01t0780400-02 | Rice | cytosol | 32.09 | 42.96 |
| Zm00001d012620_P025 | Maize | cytosol | 31.64 | 42.57 |
| OQU87670 | Sorghum | cytosol | 31.37 | 42.31 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 35.65 | 41.32 |
| CDY60225 | Canola | cytosol | 29.68 | 39.88 |
| CDX88026 | Canola | cytosol | 29.41 | 39.81 |
| CDX81101 | Canola | cytosol | 29.77 | 39.71 |
| CDX80363 | Canola | cytosol | 29.14 | 38.47 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 32.09 | 37.31 |
| PGSC0003DMT400057760 | Potato | cytosol | 22.99 | 32.45 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 6.33 | 22.54 |
| CDX72090 | Canola | mitochondrion | 6.68 | 22.46 |
| CDX86957 | Canola | cytosol | 6.24 | 22.44 |
| CDX67810 | Canola | cytosol | 6.6 | 20.61 |
| CDX91316 | Canola | cytosol | 5.97 | 20.55 |
| CDX97287 | Canola | cytosol | 5.88 | 20.25 |
| CDX70436 | Canola | plastid | 2.94 | 19.76 |
| CDY44171 | Canola | cytosol | 2.67 | 19.35 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 5.44 | 19.12 |
| CDX84544 | Canola | cytosol | 4.9 | 18.33 |
| CDY27174 | Canola | cytosol | 2.5 | 18.3 |
| CDY08856 | Canola | cytosol | 4.81 | 18.18 |
| CDX79802 | Canola | cytosol, golgi | 6.6 | 17.83 |
| CDY17912 | Canola | cytosol, golgi | 6.6 | 17.75 |
| CDX72834 | Canola | cytosol | 6.15 | 17.34 |
| CDX90556 | Canola | cytosol | 7.4 | 17.26 |
| CDY09730 | Canola | cytosol | 7.4 | 17.26 |
| CDY36678 | Canola | cytosol | 5.97 | 17.22 |
| CDX68298 | Canola | cytosol | 5.97 | 17.22 |
| CDX96351 | Canola | cytosol | 6.06 | 17.04 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 6.6 | 16.7 |
| CDY34965 | Canola | cytosol | 6.95 | 16.6 |
| CDY28352 | Canola | cytosol | 7.04 | 16.56 |
| CDY09645 | Canola | cytosol | 6.95 | 16.49 |
| CDY27046 | Canola | cytosol | 6.95 | 16.39 |
| CDX84790 | Canola | cytosol | 6.95 | 16.39 |
| CDX96156 | Canola | cytosol | 6.95 | 16.39 |
| CDX98931 | Canola | nucleus | 6.77 | 15.83 |
| CDX70097 | Canola | cytosol | 6.42 | 15.58 |
| CDY52843 | Canola | nucleus | 3.21 | 15.52 |
| CDY05801 | Canola | cytosol | 6.68 | 14.94 |
| CDY08014 | Canola | mitochondrion | 1.34 | 14.71 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.25 | 14.14 |
| CDX91118 | Canola | nucleus | 7.84 | 13.66 |
| CDY05802 | Canola | mitochondrion | 6.86 | 13.39 |
| CDX70506 | Canola | nucleus | 7.4 | 13.2 |
| CDX85646 | Canola | nucleus | 7.58 | 13.14 |
| CDX78524 | Canola | nucleus | 7.49 | 12.57 |
| CDY01533 | Canola | plastid | 0.62 | 4.43 |
| CDY69403 | Canola | nucleus | 0.36 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078IQL9 | UniProt:A0A078IQL9 | EnsemblPlants:CDY52222 | ProteinID:CDY52222 |
| ProteinID:CDY52222.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00005185001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDDCD3 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
BnaA01g35940DKatanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A078IQL9]
Coordinates
chrLK033068:-:64108..70963
Molecular Weight (calculated)
122772.0 Da
IEP (calculated)
7.207
GRAVY (calculated)
-0.484
Length
1122 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSLAFDSAE VLVLGGASSG LIKLWDLEEA KMVRAFTGHR
0101: SSCSAVEFHP FGEFLASGSN DTSLKIWDIR KKGCIQTYKG HTRDINTIKF SPDGRWVVTG GLDNAVKVWD LTAGKLIHDF KFHEGSIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEDTGVR SIKFHPDGRT LFCGLDDGLK VYSWEPVVCH DSVDMGWSTL GDLCISEGKL MGCSYYQNSV GIWVSDISQI
0301: EPYGIGSTDK KECVEKVLSV LNDQSSERVK SGARRSPSPD YETKEIKNIY IDCGNSTVAD KPGSRSTSKV NATSTGQAGD KSFILHGDTG KDSSDSGKES
0401: ITFSKTKPGM LLRPAHVRKT PSKQSVAVQS STPKQSGSDG EKTLDTKTVL DSEESGRKPF DASDSIIKSI TSKFEKALFP ESPTDEAKSM LLKPPRVQRS
0501: PNTKYNETRW AVSVDSENLD SHQSGFEESR DADLPIELAD DRGCNPTEED TSDAIILSKP ERVLTPEKTG DEQKGVESPG GSKESDSVKV VRGVKVVSGR
0601: TRSLVERFER RETITPSEED KAASAATVQS TNSVEEEAKS ASIPAVSTTP AQVMPVKLDE ATNLTTVEAP VVSTRRPRSI PARVMPVVLG RDTNMSTDVP
0701: SVTLTGPDRT SAANLTSDES SVTSTRQSRS SPAPVMPVVL NQTTKMKSDD PPVTSTRPDR SSAANLTSDE SPVSSRRQAT SPAPVTPLIL NRSRSTNMKP
0801: DEPHVIPRRP LRSSSTRIRP VMLNQTTNTH DERPVQSTRS ARTSPARVIP MKLSQADDIP SYELPVALTR SARNSPVRAI PSKINQANNV TSDASHIRSR
0901: HRFSPIQTLA TPSVIDQMAD MTLDEAHITQ TQPDYDISNQ KEDPRISERE NEDDISETLM QTHNEVLNTL QSRLTKLQIV RHFWERNDIK GAIMALKKLS
1001: DHSVQADVIS ILTDKPEILT LDLFSQLAPV LTGLLGSRTE RPVSVSLEML LKLVAVFGAV VQSNVSARRS VGVDLHAEER LQICQSCSAE LQKVQKILPL
1101: LTRRGGLIAR KAQELNLVLQ TP
0101: SSCSAVEFHP FGEFLASGSN DTSLKIWDIR KKGCIQTYKG HTRDINTIKF SPDGRWVVTG GLDNAVKVWD LTAGKLIHDF KFHEGSIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEDTGVR SIKFHPDGRT LFCGLDDGLK VYSWEPVVCH DSVDMGWSTL GDLCISEGKL MGCSYYQNSV GIWVSDISQI
0301: EPYGIGSTDK KECVEKVLSV LNDQSSERVK SGARRSPSPD YETKEIKNIY IDCGNSTVAD KPGSRSTSKV NATSTGQAGD KSFILHGDTG KDSSDSGKES
0401: ITFSKTKPGM LLRPAHVRKT PSKQSVAVQS STPKQSGSDG EKTLDTKTVL DSEESGRKPF DASDSIIKSI TSKFEKALFP ESPTDEAKSM LLKPPRVQRS
0501: PNTKYNETRW AVSVDSENLD SHQSGFEESR DADLPIELAD DRGCNPTEED TSDAIILSKP ERVLTPEKTG DEQKGVESPG GSKESDSVKV VRGVKVVSGR
0601: TRSLVERFER RETITPSEED KAASAATVQS TNSVEEEAKS ASIPAVSTTP AQVMPVKLDE ATNLTTVEAP VVSTRRPRSI PARVMPVVLG RDTNMSTDVP
0701: SVTLTGPDRT SAANLTSDES SVTSTRQSRS SPAPVMPVVL NQTTKMKSDD PPVTSTRPDR SSAANLTSDE SPVSSRRQAT SPAPVTPLIL NRSRSTNMKP
0801: DEPHVIPRRP LRSSSTRIRP VMLNQTTNTH DERPVQSTRS ARTSPARVIP MKLSQADDIP SYELPVALTR SARNSPVRAI PSKINQANNV TSDASHIRSR
0901: HRFSPIQTLA TPSVIDQMAD MTLDEAHITQ TQPDYDISNQ KEDPRISERE NEDDISETLM QTHNEVLNTL QSRLTKLQIV RHFWERNDIK GAIMALKKLS
1001: DHSVQADVIS ILTDKPEILT LDLFSQLAPV LTGLLGSRTE RPVSVSLEML LKLVAVFGAV VQSNVSARRS VGVDLHAEER LQICQSCSAE LQKVQKILPL
1101: LTRRGGLIAR KAQELNLVLQ TP
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDVSGVT SKRQTRTSPA PVMPMILNQT TKMKSDEPSI TSTWPDRTSA TDLTSDVSGV ISSRQTRTSP APVMPMKLNQ
0801: KTKIKSDEPP ITSTRPDRPS ATNLTSDESP VTSTRQAKTS PAPVTPVILN QRQTTNMKSD EPPVISTRPL RTSSARVMPV ILNQASTTYD ERPLSSSRSA
0901: RTSPARIMPM KLNQADNMPS YEPPVALTRS ARNSPARVIP VKLNQATNVT ADASHIRSRQ RFSPTQTLAT PAVFDQVTDM TLDETTKTQQ SSDILTQKEE
1001: PQISGREDDG DIWEILMRTH SEVLNTLQSR LTKLQIVRHF WERSDIKGAI AALRKLSDHS VQADVINILT DKTEILTLDL FSQLAPVLTG LLGSKTERPV
1101: NVSLEMLLKL VAVFGTVIQS TVSARRVVGV DLHAEERLQI CQSCSAELQK VQKILPLLTR RGGLIARKAQ ELNLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDVSGVT SKRQTRTSPA PVMPMILNQT TKMKSDEPSI TSTWPDRTSA TDLTSDVSGV ISSRQTRTSP APVMPMKLNQ
0801: KTKIKSDEPP ITSTRPDRPS ATNLTSDESP VTSTRQAKTS PAPVTPVILN QRQTTNMKSD EPPVISTRPL RTSSARVMPV ILNQASTTYD ERPLSSSRSA
0901: RTSPARIMPM KLNQADNMPS YEPPVALTRS ARNSPARVIP VKLNQATNVT ADASHIRSRQ RFSPTQTLAT PAVFDQVTDM TLDETTKTQQ SSDILTQKEE
1001: PQISGREDDG DIWEILMRTH SEVLNTLQSR LTKLQIVRHF WERSDIKGAI AALRKLSDHS VQADVINILT DKTEILTLDL FSQLAPVLTG LLGSKTERPV
1101: NVSLEMLLKL VAVFGTVIQS TVSARRVVGV DLHAEERLQI CQSCSAELQK VQKILPLLTR RGGLIARKAQ ELNLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.