CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004783.1-P	Field mustard	cytosol, golgi	98.32	98.8
CDX79802	Canola	cytosol, golgi	97.84	98.31
AT2G43770.1	Thale cress	cytosol	75.3	91.55
CDX67810	Canola	cytosol	73.38	85.24
VIT_05s0094g00800.t01	Wine grape	cytosol	67.87	82.27
Solyc03g059100.1.1	Tomato	nucleus	64.03	81.9
KRH06660	Soybean	nucleus	67.15	81.16
KRG94875	Soybean	nucleus	67.15	81.16
PGSC0003DMT400067694	Potato	cytosol	65.71	80.59
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	62.35	79.75
Zm00001d036709_P001	Maize	cytosol	61.63	78.83
GSMUA_Achr3P04370_001	Banana	cytosol	59.95	77.64
EER90141	Sorghum	plastid	63.55	77.26
Os06t0653800-01	Rice	nucleus	63.07	76.68
TraesCS7B01G406900.1	Wheat	cytosol, plastid	63.31	76.3
TraesCS7A01G499900.1	Wheat	nucleus	63.07	76.01
TraesCS7D01G486800.1	Wheat	cytosol, plastid	62.83	75.72
HORVU7Hr1G111780.2	Barley	cytosol, plastid	62.83	75.72
CDX98392	Canola	endoplasmic reticulum, extracellular	75.06	70.65
CDY00226	Canola	cytosol, nucleus, plastid	22.3	29.52
CDX86957	Canola	cytosol	22.06	29.49
CDX91316	Canola	cytosol	21.34	27.3
CDX97287	Canola	cytosol	21.34	27.3
CDX70436	Canola	plastid	10.79	26.95
CDY08856	Canola	cytosol	19.18	26.94
CDX84544	Canola	cytosol	19.18	26.67
CDY54233	Canola	golgi	9.83	22.04
CDX72090	Canola	mitochondrion	14.87	18.56
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	13.91	18.18
CDY52843	Canola	nucleus	10.07	18.1
CDY08014	Canola	mitochondrion	4.32	17.65
CDX96351	Canola	cytosol	16.79	17.54
CDY36678	Canola	cytosol	16.31	17.48
CDX84790	Canola	cytosol	19.9	17.44
CDY27046	Canola	cytosol	19.9	17.44
CDX96156	Canola	cytosol	19.66	17.23
CDX77842	Canola	cytosol, nucleus, peroxisome	4.08	17.17
CDX72834	Canola	cytosol	16.31	17.09
CDX68298	Canola	cytosol	15.83	16.97
CDY09645	Canola	cytosol	18.94	16.7
CDY05801	Canola	cytosol	18.7	15.54
CDX98931	Canola	nucleus	17.51	15.21
CDX70097	Canola	cytosol	16.07	14.5
CDY05802	Canola	mitochondrion	19.42	14.09
CDY09730	Canola	cytosol	15.83	13.72
CDX90556	Canola	cytosol	15.83	13.72
CDY34965	Canola	cytosol	15.35	13.62
CDY28352	Canola	cytosol	14.87	13.0
CDX91118	Canola	nucleus	16.79	10.87
CDX85646	Canola	nucleus	16.55	10.66
CDX70506	Canola	nucleus	16.07	10.65
CDX78524	Canola	nucleus	16.55	10.33
CDY44171	Canola	cytosol	3.6	9.68
CDX88026	Canola	cytosol	18.47	9.29
CDX80363	Canola	cytosol	18.7	9.18
CDY27174	Canola	cytosol	3.36	9.15
CDY34658	Canola	mitochondrion	16.31	8.88
CDY60225	Canola	cytosol	17.51	8.74
CDX81101	Canola	cytosol	17.27	8.56
CDY34846	Canola	nucleus	16.31	7.46
CDY52222	Canola	cytosol	17.75	6.6
CDY03812	Canola	cytosol	17.51	6.5
CDY15006	Canola	cytosol	15.35	6.31
CDY69403	Canola	nucleus	0.96	2.16
CDY01533	Canola	plastid	0.72	1.9

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	UniProt:A0A078FYL8	InterPro:Apc4_WD40_dom	EnsemblPlants:CDY17912	ProteinID:CDY17912
ProteinID:CDY17912.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00002259001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EE7BFF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

BnaC04g03070DBnaC04g03070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYL8]

Coordinates

chrLK032079:+:439398..442537

Molecular Weight (calculated)

45836.5 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.362

Length

417 amino acids

Sequence
(BLAST)

001: MSGFPGLSFL GPKSKNAVVA GGLTAFVFGV YFYTMKAVGG TDELQMAIDK FEDQKHVETD PKGSGNDVER FVPLSPSSDL EAEMEIMPRE NENALSAPSP
101: MELGPGPYGK QRTSSLEAPI MLLTGHPSAV YTMKFNPSGT LIASGSHDRE IFLWRVHGDC KNFMVLKGHK NAILDLHWTS DGSMIVSASP DKTVRAWDVE
201: TGKQVKKMAE HSSFVNSCCP TRRGLPLIIS GSDDGTAKLW DLRQRGAIQT FPDKYQITAV SFSDAADKIF TGGVDNDVKV WDLRKGEATM TLEGHQDTIT
301: GMSLSPDGSY LLTNGMDNKL CVWDMRPYAP QNRCVKVFEG HQHNFEKNLL KCSWSPDGTK VTAGSADRMV HIWDTTTRRI LYKLPGHKGS VNECVFHPTE
401: PIIGSCSSDK DIYLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.