Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03812 | Canola | cytosol | 88.07 | 79.52 |
| CDY52222 | Canola | cytosol | 87.77 | 79.32 |
| AT1G61210.1 | Thale cress | cytosol | 78.11 | 67.06 |
| CDY54233 | Canola | golgi | 11.83 | 64.52 |
| CDY34658 | Canola | mitochondrion | 48.32 | 63.97 |
| CDY34846 | Canola | nucleus | 55.03 | 61.18 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 27.71 | 53.93 |
| KRH20528 | Soybean | cytosol | 38.95 | 50.77 |
| KRH49977 | Soybean | cytosol | 32.05 | 47.45 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 13.71 | 41.0 |
| Solyc02g078800.2.1 | Tomato | extracellular | 41.52 | 40.91 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 31.56 | 38.65 |
| Os01t0780400-02 | Rice | cytosol | 31.76 | 38.42 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 31.46 | 38.39 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 31.46 | 38.39 |
| OQU87670 | Sorghum | cytosol | 31.07 | 37.86 |
| Zm00001d012620_P025 | Maize | cytosol | 31.07 | 37.77 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 34.91 | 36.57 |
| CDX88026 | Canola | cytosol | 28.8 | 35.22 |
| CDX81101 | Canola | cytosol | 28.99 | 34.96 |
| CDY60225 | Canola | cytosol | 28.7 | 34.85 |
| CDX80363 | Canola | cytosol | 28.4 | 33.88 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 31.46 | 33.06 |
| PGSC0003DMT400057760 | Potato | cytosol | 23.77 | 30.31 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 6.21 | 20.0 |
| CDX86957 | Canola | cytosol | 6.11 | 19.87 |
| CDX72090 | Canola | mitochondrion | 6.21 | 18.86 |
| CDX70436 | Canola | plastid | 3.06 | 18.56 |
| CDX97287 | Canola | cytosol | 5.82 | 18.1 |
| CDX91316 | Canola | cytosol | 5.82 | 18.1 |
| CDX67810 | Canola | cytosol | 6.31 | 17.83 |
| CDY44171 | Canola | cytosol | 2.66 | 17.42 |
| CDY27174 | Canola | cytosol | 2.56 | 16.99 |
| CDX72834 | Canola | cytosol | 6.51 | 16.58 |
| CDY36678 | Canola | cytosol | 6.31 | 16.45 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 5.13 | 16.3 |
| CDX96351 | Canola | cytosol | 6.41 | 16.29 |
| CDX68298 | Canola | cytosol | 6.21 | 16.2 |
| CDX84544 | Canola | cytosol | 4.73 | 16.0 |
| CDY08856 | Canola | cytosol | 4.64 | 15.82 |
| CDX79802 | Canola | cytosol, golgi | 6.31 | 15.42 |
| CDY17912 | Canola | cytosol, golgi | 6.31 | 15.35 |
| CDY09645 | Canola | cytosol | 6.9 | 14.8 |
| CDY09730 | Canola | cytosol | 6.9 | 14.55 |
| CDX90556 | Canola | cytosol | 6.9 | 14.55 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 6.31 | 14.45 |
| CDY52843 | Canola | nucleus | 3.25 | 14.22 |
| CDY34965 | Canola | cytosol | 6.51 | 14.04 |
| CDY27046 | Canola | cytosol | 6.51 | 13.87 |
| CDX96156 | Canola | cytosol | 6.51 | 13.87 |
| CDX84790 | Canola | cytosol | 6.51 | 13.87 |
| CDY28352 | Canola | cytosol | 6.51 | 13.84 |
| CDX98931 | Canola | nucleus | 6.31 | 13.33 |
| CDX70097 | Canola | cytosol | 5.92 | 12.99 |
| CDY08014 | Canola | mitochondrion | 1.28 | 12.75 |
| CDX91118 | Canola | nucleus | 7.79 | 12.27 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.18 | 12.12 |
| CDY05801 | Canola | cytosol | 5.92 | 11.95 |
| CDX70506 | Canola | nucleus | 7.4 | 11.92 |
| CDX85646 | Canola | nucleus | 7.5 | 11.75 |
| CDX78524 | Canola | nucleus | 7.5 | 11.38 |
| CDY05802 | Canola | mitochondrion | 6.02 | 10.61 |
| CDY01533 | Canola | plastid | 0.69 | 4.43 |
| CDY69403 | Canola | nucleus | 0.39 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078FPH8 | UniProt:A0A078FPH8 | EnsemblPlants:CDY15006 | ProteinID:CDY15006 |
| ProteinID:CDY15006.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 |
| GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00085041001 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 |
| PFAM:PF13925 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EE381C | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng04090DKatanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A078FPH8]
Coordinates
chrLK032050:+:147802..159158
Molecular Weight (calculated)
111486.0 Da
IEP (calculated)
8.420
GRAVY (calculated)
-0.425
Length
1014 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSGL LITGGDDYKV NLWAIGKPTS LMSLCGHASE VDSVAFDSAE VLVLAGASSG LIKLWDLEEA KNRVVLLLNF
0101: IPFGEFLASG SNDTNLKIWY IRKKGCIQTY KGHTRGIDTI KFSPDGRWVV TGGLDNAVKV RTALLILCFL IHDFKFHEGS IRSLDFHPLE FLLATGSSDR
0201: TDTGVRSIKF HPDGRTLFCG LDDGLKVYSW EPVVCHDSVD MGWSTLGDLC ISEGKFMGCS YYQNSVGIWV SDISQIEPYV IGSVDKKECV EKVLSVLDDQ
0301: SSERVRSGPR GSSSPDYETK EIKNIYIDCG NSNVAQKPGS SSTSNVNATS TGQTGDKSFI VHSDTGKDSS ESGRESITFS KTKQGMLLRP AHVRKTPTKQ
0401: SVAVQSSTPI QSESDGEKTL DTKAVLDSEE SGRKPFDAID SIIKSITSKF EKALFPESPT DEAKSMLLKP PRVQRSPNTK YNETRWAVSV DSENVDSNQS
0501: SLEKSRDTVL EEEFADDRGC NPSEEDANDK IILSKPEQVL SPEKAGDEQK SKHPIPWGSK ESDSVKVVKG VKVVSGRTRS LVERFERRET IIPVVSTRRP
0601: RSIPARVMPV VLGRDENMTT GALSVTLTRP DRTPPANLTS DESCVSSTRQ ARSSPPPVMP VVLNQTTKME SDDPPATSAR PDRSAAANLA SDDSPVTSTR
0701: QARTSPAPVT PLILNRSRST NMKPDETHVI TRRPLRSSSA RARPVMHNQT TNTHDERPVQ STRSARTSLA RVIPMKLNQA DDIPSYEPPV ALTRSARNSP
0801: VRVIHANHVT SDASHIRSRH RFSPNQTLAT LAKEEPQISG RENEDDISET LMQAHNEVLN TLQSRLTKLQ IVRHFWERGD IKGAIMALKK LSDHSFQADV
0901: ISILTDKTDI LTLDLFSQLA PVLTGLVGSR TERPVSVSLE MLLKLVAVFG TVVQSTVSAR RSVGVDIHAE ERLQICQSCS AELQKIQKIL PLLTRRVGLI
1001: ARKAQELNLV LQTP
0101: IPFGEFLASG SNDTNLKIWY IRKKGCIQTY KGHTRGIDTI KFSPDGRWVV TGGLDNAVKV RTALLILCFL IHDFKFHEGS IRSLDFHPLE FLLATGSSDR
0201: TDTGVRSIKF HPDGRTLFCG LDDGLKVYSW EPVVCHDSVD MGWSTLGDLC ISEGKFMGCS YYQNSVGIWV SDISQIEPYV IGSVDKKECV EKVLSVLDDQ
0301: SSERVRSGPR GSSSPDYETK EIKNIYIDCG NSNVAQKPGS SSTSNVNATS TGQTGDKSFI VHSDTGKDSS ESGRESITFS KTKQGMLLRP AHVRKTPTKQ
0401: SVAVQSSTPI QSESDGEKTL DTKAVLDSEE SGRKPFDAID SIIKSITSKF EKALFPESPT DEAKSMLLKP PRVQRSPNTK YNETRWAVSV DSENVDSNQS
0501: SLEKSRDTVL EEEFADDRGC NPSEEDANDK IILSKPEQVL SPEKAGDEQK SKHPIPWGSK ESDSVKVVKG VKVVSGRTRS LVERFERRET IIPVVSTRRP
0601: RSIPARVMPV VLGRDENMTT GALSVTLTRP DRTPPANLTS DESCVSSTRQ ARSSPPPVMP VVLNQTTKME SDDPPATSAR PDRSAAANLA SDDSPVTSTR
0701: QARTSPAPVT PLILNRSRST NMKPDETHVI TRRPLRSSSA RARPVMHNQT TNTHDERPVQ STRSARTSLA RVIPMKLNQA DDIPSYEPPV ALTRSARNSP
0801: VRVIHANHVT SDASHIRSRH RFSPNQTLAT LAKEEPQISG RENEDDISET LMQAHNEVLN TLQSRLTKLQ IVRHFWERGD IKGAIMALKK LSDHSFQADV
0901: ISILTDKTDI LTLDLFSQLA PVLTGLVGSR TERPVSVSLE MLLKLVAVFG TVVQSTVSAR RSVGVDIHAE ERLQICQSCS AELQKIQKIL PLLTRRVGLI
1001: ARKAQELNLV LQTP
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.