CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68298	Canola	cytosol	98.2	98.2
CDX72834	Canola	cytosol	89.72	87.69
CDX96351	Canola	cytosol	89.2	86.97
AT1G71840.1	Thale cress	nucleus	87.15	83.29
VIT_18s0164g00020.t01	Wine grape	nucleus	65.3	64.96
VIT_11s0016g02220.t01	Wine grape	cytosol	64.78	64.12
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	62.72	61.46
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	62.21	60.96
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	58.35	58.06
GSMUA_Achr11P...	Banana	cytosol	50.9	57.39
KRH37298	Soybean	cytosol	53.21	54.62
Os03t0685600-01	Rice	cytosol	51.67	51.02
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	28.79	50.91
KRH35009	Soybean	cytosol	17.99	50.72
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	51.67	50.5
TraesCS1D01G363000.1	Wheat	cytosol	49.87	49.24
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	49.87	48.87
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	49.61	48.74
TraesCS1B01G374800.1	Wheat	cytosol	49.36	48.73
HORVU3Hr1G013230.4	Barley	cytosol	48.84	47.5
Zm00001d041945_P003	Maize	cytosol	49.87	45.65
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	49.36	39.59
Zm00001d011779_P005	Maize	cytosol	49.61	39.39
HORVU2Hr1G022250.4	Barley	mitochondrion	49.87	39.11
CDY00226	Canola	cytosol, nucleus, plastid	19.79	24.44
CDX86957	Canola	cytosol	19.54	24.36
CDX97287	Canola	cytosol	19.79	23.62
CDX91316	Canola	cytosol	19.79	23.62
HORVU5Hr1G075920.16	Barley	nucleus	38.56	20.41
CDX70436	Canola	plastid	8.74	20.36
CDX84544	Canola	cytosol	14.91	19.33
CDY08856	Canola	cytosol	14.65	19.19
CDX67810	Canola	cytosol	16.71	18.11
CDY09645	Canola	cytosol	21.08	17.34
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	13.88	16.93
CDX79802	Canola	cytosol, golgi	17.48	16.39
CDY17912	Canola	cytosol, golgi	17.48	16.31
CDY27046	Canola	cytosol	19.79	16.18
CDX84790	Canola	cytosol	19.79	16.18
CDX96156	Canola	cytosol	19.79	16.18
CDY52843	Canola	nucleus	9.51	15.95
CDX98931	Canola	nucleus	19.02	15.42
CDX72090	Canola	mitochondrion	13.11	15.27
CDY54233	Canola	golgi	7.2	15.05
CDX98392	Canola	endoplasmic reticulum, extracellular	16.45	14.45
CDX70097	Canola	cytosol	16.97	14.29
CDY44171	Canola	cytosol	5.66	14.19
CDY08014	Canola	mitochondrion	3.6	13.73
CDY05801	Canola	cytosol	17.48	13.55
CDX77842	Canola	cytosol, nucleus, peroxisome	3.34	13.13
CDY09730	Canola	cytosol	15.17	12.27
CDX90556	Canola	cytosol	15.17	12.27
CDY05802	Canola	mitochondrion	17.74	12.0
CDY34965	Canola	cytosol	14.4	11.91
CDY27174	Canola	cytosol	4.63	11.76
CDY28352	Canola	cytosol	13.62	11.11
CDX91118	Canola	nucleus	17.74	10.71
CDX85646	Canola	nucleus	17.48	10.51
CDX70506	Canola	nucleus	16.97	10.49
CDX78524	Canola	nucleus	17.22	10.03
CDY34658	Canola	mitochondrion	19.02	9.66
CDY60225	Canola	cytosol	17.22	8.02
CDX80363	Canola	cytosol	17.48	8.0
CDX81101	Canola	cytosol	17.22	7.97
CDX88026	Canola	cytosol	16.97	7.96
CDY34846	Canola	nucleus	18.51	7.89
CDY15006	Canola	cytosol	16.45	6.31
CDY52222	Canola	cytosol	17.22	5.97
CDY03812	Canola	cytosol	16.97	5.88
CDY01533	Canola	plastid	2.31	5.7
CDY69403	Canola	nucleus	1.8	3.78

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078HIN2	EnsemblPlants:CDY36678	ProteinID:CDY36678	ProteinID:CDY36678.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00062446001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857
PANTHER:PTHR19857:SF8	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI0004EEC720	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:

Description

BnaCnng07800DBnaCnng07800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIN2]

Coordinates

chrLK032381:-:187056..189159

Molecular Weight (calculated)

41816.9 Da

IEP (calculated)

4.077

GRAVY (calculated)

-0.274

Length

389 amino acids

Sequence
(BLAST)

001: MSNRDMNNPA MEEEDEGDVF LGESDVLHEI DVDGEDLPDA YDEDDNDNDN EDEVFDENDD SVHTFTGHKG ELYALTCSPL DPTLVATGGG DDKAFLWKIG
101: NGDWAAELPA HKDSVSSLAF SYDGQLLASG GLDGVVQIFD ASSGTLKCVL DGPGSGIEWV KWHPRGHIVL AGSEDCSMWM WNADKEAYLN MFSGHNQSVT
201: CGDFTPEGKL ICTGSDDGSH PYHTEGLICL DINSNSSLAI SGSKDGSVHI VNIVTGKVVS SLSSHTESVE CVKFSPSSAT IPMAATGGMD KKLVIWDLQH
301: STPRFICEHA EGVTCVSWIG TSKYLATGCA DGTVSVWDSL LGNCVHTFHG HQDAVQSISV SANTEFIVSV SVDHTARVYD TSEFQNKME

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.