Factsheet for TraesCS1D01G363000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G374800.1	Wheat	cytosol	95.43	95.43
HORVU3Hr1G013230.4	Barley	cytosol	93.15	91.75
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	50.76	90.91
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	83.25	82.83
Os03t0685600-01	Rice	cytosol	72.84	72.84
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	72.59	71.86
Zm00001d041945_P003	Maize	cytosol	71.83	66.59
GSMUA_Achr11P...	Banana	cytosol	50.25	57.39
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	57.61	57.18
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	56.85	56.42
Zm00001d011779_P005	Maize	cytosol	69.29	55.71
VIT_11s0016g02220.t01	Wine grape	cytosol	53.55	53.69
VIT_18s0164g00020.t01	Wine grape	nucleus	52.54	52.94
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	52.28	52.69
CDX68298	Canola	cytosol	50.0	50.64
AT1G71840.1	Thale cress	nucleus	52.28	50.61
CDX72834	Canola	cytosol	50.76	50.25
CDY36678	Canola	cytosol	49.24	49.87
Bra003910.1-P	Field mustard	cytosol	47.72	49.74
CDX96351	Canola	cytosol	50.0	49.37
Bra016111.1-P	Field mustard	cytosol	50.0	49.37
KRH35009	Soybean	cytosol	16.75	47.83
KRH37298	Soybean	cytosol	45.18	46.97
TraesCS4D01G056800.1	Wheat	cytosol	21.83	26.88
TraesCS7D01G486800.1	Wheat	cytosol, plastid	20.05	22.83
TraesCS2D01G204900.1	Wheat	cytosol, plastid	19.54	21.33
TraesCS1D01G451700.1	Wheat	cytosol	22.84	18.95
TraesCS6D01G232000.1	Wheat	cytosol	14.21	18.67
TraesCS3D01G181100.1	Wheat	cytosol	19.29	15.87
TraesCS5D01G394200.1	Wheat	cytosol	16.75	12.79
TraesCS5D01G300900.1	Wheat	nucleus	18.27	10.1
TraesCS1D01G161300.1	Wheat	cytosol	18.27	9.0
TraesCS3D01G313800.1	Wheat	cytosol	17.77	8.45
TraesCS2D01G561900.1	Wheat	cytosol	18.78	8.0
TraesCS1D01G151100.1	Wheat	cytosol	6.35	3.94

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS1D01G363000	EnsemblPlants:TraesCS1D01G363000.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:444897905..444908596

Molecular Weight (calculated)

42931.4 Da

IEP (calculated)

4.178

GRAVY (calculated)

-0.205

Length

394 amino acids

Sequence
(BLAST)

001: MIRAAAVMSE GSEGEEVFID DDDIISEIPL DEEDLPDQDD DDEQDQDMMD EVEDHSAYAF HGHTDEVFAA ACSPVDASLV VSGGKDDRGF LWRIGSAEDV
101: QELPGHNDTV STVAFSSDGK LVACGSMDGQ INVWNTATRT LQRTLEGSES GFEWLKWDLR SHIIIAGSED FNIWMWNADT NAFLNTFAGH SNTVTCGDFT
201: PDGELICSGS DDATLRIWDR ESAHCRHVVR GHGYHTQGLT CLAITWDSQS VVSGSQDSSV HIVSIKSGQV VGSLVGHTNS VECIGISPRY NWVATRSMDE
301: TLIIWDLTHQ AIRSICEHDD GVTCLAWIGS SRYVASGCID GTVRIWDSLS GDLARILSGH RDAVQALAVS ANRSSIVSVS SDKSARVFDI SMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.