Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G161300.1 | Wheat | cytosol | 91.97 | 73.0 |
| HORVU1Hr1G061600.22 | Barley | cytosol | 87.24 | 68.23 |
| Os10t0494800-01 | Rice | cytosol | 62.99 | 45.71 |
| OQU91573 | Sorghum | plastid | 57.32 | 41.65 |
| Zm00001d032598_P023 | Maize | cytosol, plasma membrane, plastid | 56.06 | 38.57 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 35.59 | 24.43 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 31.02 | 23.79 |
| Zm00001d033713_P002 | Maize | cytosol, extracellular, plastid | 7.56 | 9.58 |
| TraesCS6D01G232000.1 | Wheat | cytosol | 3.78 | 8.0 |
| TraesCS4D01G056800.1 | Wheat | cytosol | 3.94 | 7.81 |
| TraesCS7D01G486800.1 | Wheat | cytosol, plastid | 3.94 | 7.23 |
| TraesCS1D01G451700.1 | Wheat | cytosol | 5.35 | 7.16 |
| TraesCS3D01G181100.1 | Wheat | cytosol | 4.88 | 6.47 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 3.94 | 6.35 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 3.94 | 6.31 |
| TraesCS2D01G204900.1 | Wheat | cytosol, plastid | 3.46 | 6.09 |
| TraesCS5D01G300900.1 | Wheat | nucleus | 4.72 | 4.21 |
| TraesCS5D01G394200.1 | Wheat | cytosol | 2.36 | 2.91 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | PFAM:PF00400 | PFAM:PF13925 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF14 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:TraesCS1D01G151100 | EnsemblPlants:TraesCS1D01G151100.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:208833722..208852532
Molecular Weight (calculated)
69822.9 Da
IEP (calculated)
7.707
GRAVY (calculated)
-0.242
Length
635 amino acids
Sequence
(BLAST)
(BLAST)
001: MTWLHEGPIN CLDFHPHEFL LATGSADKTV KFWDLETFEL IGSSGPENCR EYYMPASVVR SMTFNSDVKA LFCGLHESLK VLSWEPIICH DAVDVGWSTL
101: ADLNVQEGKL LGCSYNQSCV GIWVVDLMKF DPYTVGSAEA FWNGTGNGPL QADNSISSML GSLSISRRPE ANETSSTLLK RPMSASKEAS VPASSAVRKR
201: LSKAPGINNL RLTRAESAPL LSPRVRLKPN STDHQKRHIA NVRFKVDLST SARMIPGNSH ASAAPTYIPR SNIFACSSEG STFVPGIVPR HVSKVDAGSN
301: LSEAAAAAIK PEQLLKGHLA VDHDKDVHRS VFQSKPITSK TPQRKFIRET SSDGDINCFG PLCTESVQSN KVDNWYDVCG FKETKSAVGR NPQFVNVNRT
401: VVFGSSQLVE SSESSIMQNR GTGHLFASYE RSEYAPTSDG LRQSSFAGER SASANDDDLI ADLMQNHQEF IHGVKSRLTK LELVYRCWQN NDIKGSVSAM
501: RRMSDHAVTA DIINVLIMEK STKYITLDIC TSVLPLASNL LESGYDRHLN VALATILKLV KSFRASIFSI LSSAPPVGVD LEAEHWLERC SSCFQELDKI
601: NASLISLTRR EGKVGRSARE LSLLLHDIFK TPSTM
101: ADLNVQEGKL LGCSYNQSCV GIWVVDLMKF DPYTVGSAEA FWNGTGNGPL QADNSISSML GSLSISRRPE ANETSSTLLK RPMSASKEAS VPASSAVRKR
201: LSKAPGINNL RLTRAESAPL LSPRVRLKPN STDHQKRHIA NVRFKVDLST SARMIPGNSH ASAAPTYIPR SNIFACSSEG STFVPGIVPR HVSKVDAGSN
301: LSEAAAAAIK PEQLLKGHLA VDHDKDVHRS VFQSKPITSK TPQRKFIRET SSDGDINCFG PLCTESVQSN KVDNWYDVCG FKETKSAVGR NPQFVNVNRT
401: VVFGSSQLVE SSESSIMQNR GTGHLFASYE RSEYAPTSDG LRQSSFAGER SASANDDDLI ADLMQNHQEF IHGVKSRLTK LELVYRCWQN NDIKGSVSAM
501: RRMSDHAVTA DIINVLIMEK STKYITLDIC TSVLPLASNL LESGYDRHLN VALATILKLV KSFRASIFSI LSSAPPVGVD LEAEHWLERC SSCFQELDKI
601: NASLISLTRR EGKVGRSARE LSLLLHDIFK TPSTM
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.