Factsheet for Zm00001d033713_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91573	Sorghum	plastid	41.72	23.91
TraesCS1D01G161300.1	Wheat	cytosol	37.52	23.5
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	42.71	23.19
HORVU1Hr1G061600.22	Barley	cytosol	37.52	23.15
TraesCS1A01G164300.1	Wheat	cytosol	37.13	22.85
TraesCS1B01G181100.1	Wheat	cytosol	36.73	22.33
Os10t0494800-01	Rice	cytosol	37.92	21.71
Zm00001d026621_P006	Maize	cytosol	33.73	18.57
Zm00001d001828_P033	Maize	cytosol	33.93	18.44
Zm00001d012620_P025	Maize	cytosol	30.34	18.23
Zm00001d033849_P002	Maize	extracellular, nucleus	11.58	18.18
Zm00001d021866_P001	Maize	plastid	10.98	16.77
Zm00001d021868_P001	Maize	plastid	10.78	16.46
Zm00001d036709_P001	Maize	cytosol	10.58	16.26
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	10.58	16.26
Zm00001d050708_P002	Maize	cytosol	8.58	14.19
Zm00001d041945_P003	Maize	cytosol	11.58	13.65
Zm00001d033994_P002	Maize	mitochondrion, nucleus	12.57	12.43
Zm00001d039211_P006	Maize	cytosol	12.18	12.27
Zm00001d011779_P005	Maize	cytosol	11.78	12.04
Zm00001d033309_P003	Maize	cytosol	11.18	11.59
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	13.37	9.33
TraesCS1D01G151100.1	Wheat	cytosol	9.58	7.56

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	MapMan:26.10.2.1	UniProt:A0A1R3MIT0	InterPro:DUF1084	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
ProteinID:ONM08457.1	PFAM:PF00400	PFAM:PF06454	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF14	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00097CDA2F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d033713
EnsemblPlants:Zm00001d033713_P002	EnsemblPlants:Zm00001d033713_T002	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:271986535..271991029

Molecular Weight (calculated)

56070.8 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.039

Length

501 amino acids

Sequence
(BLAST)

001: MLPVLEVLCC AAAGRGGRGL VQPVLRRTLQ TNPRLEGALE MLLVLEVLCC AAAGRGGVDW YSLCCCGRFR RTPDWRAPWR CSWCSRSSGG CPGDAPGARG
101: AGGIHMTAYF TAPWAGGATS TSRRALRHRL GRRAGKHPPA SLRFPDPCLV QLIRIECRVS EYGWTTQKVF QFLNFLVNGV RSVVFVLRRN VQLVEPEDMP
201: GLAFFTTYAL LVLFWAKIYY QARAMSTDWL RPTFYWINGV VYAIQEFVAH TLNVNCAKFG RRASRILITG GEDLKVNLWA IGKPGFTSPV ESVSFDSSEV
301: TIGAGAASGT IKIWNIEEAK VVRTFTGHKS SCASLDFHRF GEFLAIGSSD TNMKIWDTRQ QRCIHTYKGH TQRINVLKFT PDGRWIVSGG ADNSVKVWDL
401: TAGKLMHDFC LHEGPVNCLV VHPYEFLLAT GSVDKTVKFW DLETFELIGS AGHEILWRGY IKMVYYQGQA KMVIQLIRSA PSEQNNSRVI CYTNGYMYQW
501: D

Best Arabidopsis Sequence Match ( AT1G61210.2 )
(BLAST)

0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDVSGVT SKRQTRTSPA PVMPMILNQT TKMKSDEPSI TSTWPDRTSA TDLTSDVSGV ISSRQTRTSP APVMPMKLNQ
0801: KTKIKSDEPP ITSTRPDRPS ATNLTSDESP VTSTRQAKTS PAPVTPVILN QRQTTNMKSD EPPVISTRPL RTSSARVMPV ILNQASTTYD ERPLSSSRSA
0901: RTSPARIMPM KLNQADNMPS YEPPVALTRS ARNSPARVIP VKLNQATNVT ADASHIRSRQ RFSPTQTLAT PAVFDQVTDM TLDETTKTQQ SSDILTQKEE
1001: PQISGREDDG DIWEILMRTH SEVLNTLQSR LTKLQIVRHF WERSDIKGAI AALRKLSDHS VQADVINILT DKTEILTLDL FSQLAPVLTG LLGSKTERPV
1101: NVSLEMLLKL VAVFGTVIQS TVSARRVVGV DLHAEERLQI CQSCSAELQK VQKILPLLTR RGGLIARKAQ ELNLVLQTP

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.