Factsheet for Zm00001d011779_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041945_P003	Maize	cytosol	75.92	87.53
Os03t0685600-01	Rice	cytosol	65.1	80.96
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	60.2	74.31
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	59.8	73.99
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	32.65	72.73
TraesCS1B01G374800.1	Wheat	cytosol	55.92	69.54
TraesCS1D01G363000.1	Wheat	cytosol	55.71	69.29
HORVU3Hr1G013230.4	Barley	cytosol	56.33	69.0
GSMUA_Achr11P...	Banana	cytosol	45.31	64.35
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	60.2	60.82
HORVU2Hr1G022250.4	Barley	mitochondrion	60.61	59.88
VIT_18s0164g00020.t01	Wine grape	nucleus	46.94	58.82
VIT_11s0016g02220.t01	Wine grape	cytosol	46.73	58.27
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	46.94	57.93
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	46.12	56.93
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	42.86	53.71
AT1G71840.1	Thale cress	nucleus	41.84	50.37
CDX72834	Canola	cytosol	40.82	50.25
CDX68298	Canola	cytosol	39.59	49.87
CDY36678	Canola	cytosol	39.39	49.61
CDX96351	Canola	cytosol	40.0	49.12
Bra003910.1-P	Field mustard	cytosol	37.55	48.68
Bra016111.1-P	Field mustard	cytosol	39.59	48.62
KRH35009	Soybean	cytosol	13.67	48.55
KRH37298	Soybean	cytosol	36.94	47.76
HORVU5Hr1G075920.16	Barley	nucleus	37.35	24.9
Zm00001d033849_P002	Maize	extracellular, nucleus	15.92	24.45
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	16.12	24.23
Zm00001d036709_P001	Maize	cytosol	15.92	23.93
Zm00001d021866_P001	Maize	plastid	14.08	21.04
Zm00001d021868_P001	Maize	plastid	14.08	21.04
Zm00001d050708_P002	Maize	cytosol	12.45	20.13
Zm00001d039211_P006	Maize	cytosol	15.92	15.69
Zm00001d033309_P003	Maize	cytosol	14.9	15.11
Zm00001d033994_P002	Maize	mitochondrion, nucleus	12.86	12.43
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	12.04	11.78
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	14.49	9.89
Zm00001d012620_P025	Maize	cytosol	13.27	7.79
Zm00001d001828_P033	Maize	cytosol	13.27	7.05
Zm00001d026621_P006	Maize	cytosol	13.06	7.03
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	13.06	6.93

Protein Annotations

EntrezGene:100381463	Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6G3U1	ProteinID:AQK97999.1	ProteinID:AQK98004.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000845906F
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	EnsemblPlantsGene:Zm00001d011779	EnsemblPlants:Zm00001d011779_P005
EnsemblPlants:Zm00001d011779_T005	SEG:seg	:	:	:	:

Description

transducin family protein / WD-40 repeat family protein

Coordinates

chr8:+:161454835..161467149

Molecular Weight (calculated)

53266.0 Da

IEP (calculated)

4.322

GRAVY (calculated)

-0.119

Length

490 amino acids

Sequence
(BLAST)

001: MSISGELPGE GSDGEEEVFI DEEDIIHEIT IDEEDLPDRD EEDDDVGDGI GRGGFCLELQ LSVYAKFSLS APPFFCQLAS QIVLEEIEKP ADDDVLSCSI
101: TFHDLHLSHQ QCFIMQSNGY FRFQLIQKTS LMILRTHFLA TKASCYTRNP TDASLVASGG KDDRGFLWRI GSDEGALELT GHKDTVGTVA FSSDGNLLAC
201: GSFDGQINVW NTAARALKGT LEGSGSGFEW LKWHPRGHLI IAGSEDCNVW MWNADHNAII NTFVGHSNTV TCGDFTPDGK LICTGSDDAS LRIWDPRSAQ
301: SRHVIRDFIE FSMECVFVEH IFELVDGHGY HTDGLTCLSM TLDSQTVVSG SKDSSVHAVN VNSGQIVGSL VGHTTSIECV GISSSYGWVA TGSMDQKLII
401: WDLTHQSSRC TCEHDEGVTS LAWLGSSRYV ASGCIDGKVR IWDSLSGDCA REFSGHADVV QSMAITADGN AMVSVSSDGS ARVFDISMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.