Factsheet for Zm00001d001828_P033

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27434	Sorghum	cytosol	91.87	92.07
Zm00001d026621_P006	Maize	cytosol	88.18	89.34
TraesCS2A01G592600.1	Wheat	cytosol	79.61	79.35
TraesCS2D01G561900.1	Wheat	cytosol	79.28	79.03
TraesCS2B01G591600.2	Wheat	cytosol	78.09	78.52
Os04t0677700-00	Rice	cytosol	73.75	76.4
GSMUA_Achr3P27210_001	Banana	golgi	35.14	68.5
KRG93160	Soybean	cytosol	50.11	60.87
KRH56498	Soybean	cytosol	50.11	60.87
VIT_10s0071g01150.t01	Wine grape	cytosol	52.06	60.23
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	50.33	58.51
Solyc02g021360.2.1	Tomato	cytosol	48.48	56.02
Solyc04g008720.2.1	Tomato	cytosol	46.53	52.96
PGSC0003DMT400065114	Potato	cytosol	46.53	52.9
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	47.07	51.85
AT5G08390.1	Thale cress	cytosol	46.85	51.49
CDX88026	Canola	cytosol	45.99	51.15
CDY60225	Canola	cytosol	46.31	51.14
CDX81101	Canola	cytosol	46.64	51.13
Bra005990.1-P	Field mustard	cytosol	46.85	50.94
CDX80363	Canola	cytosol	45.88	49.76
Bra009683.1-P	Field mustard	cytosol	45.88	46.69
GSMUA_Achr9P23740_001	Banana	golgi	50.98	44.85
Zm00001d012620_P025	Maize	cytosol	36.01	39.81
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	38.29	38.24
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	18.44	33.93
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	8.68	24.54
Zm00001d036709_P001	Maize	cytosol	8.68	24.54
Zm00001d033849_P002	Maize	extracellular, nucleus	7.59	21.94
Zm00001d021866_P001	Maize	plastid	7.7	21.65
Zm00001d021868_P001	Maize	plastid	7.48	21.04
Zm00001d050708_P002	Maize	cytosol	5.97	18.15
Zm00001d039211_P006	Maize	cytosol	8.79	16.3
Zm00001d041945_P003	Maize	cytosol	7.48	16.24
Zm00001d033309_P003	Maize	cytosol	8.03	15.32
Zm00001d033994_P002	Maize	mitochondrion, nucleus	7.81	14.2
Zm00001d011779_P005	Maize	cytosol	7.05	13.27
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	10.09	12.95

Protein Annotations

EntrezGene:103645759	MapMan:13.4.4.2.2	Gene3D:2.130.10.10	UniProt:A0A1D6DTA6	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987
GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal
InterPro:Katanin_bsu1	HAMAP:MF_03022	ProteinID:ONM12105.1	PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000844AF91
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d001828
EnsemblPlants:Zm00001d001828_P033	EnsemblPlants:Zm00001d001828_T033	SEG:seg	:	:	:

Description

Katanin p80 WD40 repeat-containing subunit B1 homolog

Coordinates

chr2:+:1548730..1557092

Molecular Weight (calculated)

100935.0 Da

IEP (calculated)

8.040

GRAVY (calculated)

-0.436

Length

922 amino acids

Sequence
(BLAST)

001: MTTNTKRAYK LRVEEFVAHS SNVNCLKIGR KTSRVLVTGG EDHKVNLWAI GKPNSILSLS GHTSAVESVG FDSTEVFVAA GAASGTIKLW DLEEAKIVRT
101: LTGHRSNCMS VDFHPFGEFF ASGSLDTNLK IWDIRRKNCI HTYKGHTRGV NTIRFTPDGR WVVSGGEDNI VKLWDLTAGK LLHEFKCHEG QIQCIDFHPH
201: EFLLATGSAD KTVKFWDLET FELIGSTGPE TTGVRSMTFN PDGRSLLCGL HESLKVFSWE PIRCHDTVDV GWSRLADLNV HEGKLLGCSF NQSCVGIWVV
301: DLTRLEPYTM GTSTKVNGHS ELKTVSSGTL PLQNDSGSRA NIGRSSVLQN TENNLKTTSG RLSASQNSDS APKETNSAPS SGLIPSTPHR AGVGSHNRSV
401: GNSAFQSGGT TLKRSSLRNN SASNVHNFSK ADVVPVIVPR TSSGGELATD SRSDAADVAP VLPKVTRRVE PATDSRKESN DVELVVPRAS SRMEIADLAP
501: ISSSKSGRRL ESAPDSKEES ADTAPVVVSN PRANVRMEIV SDSAPALSKS NRKLDSGTNS KKESADAVIV PRTNSRMEMI SDSRREPSAG RISPFRIQSR
601: YAEPRKLAHA RTDSNKVDSR SKITETEDFN CQIFLPRRNS VFQTISSEEP REDVKCGPVD RVGFSNSSEP NASVRNENYV PRMRKPGDNC YIEVSRAGRA
701: RSSVSNWEGR DQPPSHEEPT TSSSTLAPTG HPYSSRGSNQ ASEAPIIASD EDVLSLIMER HDLFLSSTKS RLMKLQIIHQ MWERNDIRGV LSAMDRMGDH
801: AVCADMASVL MEKSETITLD LCTSILPVVT DLLESKIDRH LVVALELLVK LVRTFGPMIH STVSSGPCVG VDLEAEQRRE RCNLCFIELE KAKNKLPSLT
901: RRKGAVANAA QELALVFQEI MS

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.