Factsheet for Solyc02g021360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008720.2.1	Tomato	cytosol	75.19	74.07
VIT_10s0071g01150.t01	Wine grape	cytosol	70.8	70.89
GSMUA_Achr3P27210_001	Banana	golgi	40.6	68.5
KRG93160	Soybean	cytosol	64.91	68.25
KRH56498	Soybean	cytosol	64.29	67.59
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	61.28	61.66
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	61.03	58.18
CDX88026	Canola	cytosol	60.28	58.02
CDX80363	Canola	cytosol	59.77	56.12
AT5G08390.1	Thale cress	cytosol	58.4	55.54
CDY60225	Canola	cytosol	57.02	54.49
Bra005990.1-P	Field mustard	cytosol	57.89	54.48
CDX81101	Canola	cytosol	57.27	54.34
Bra009683.1-P	Field mustard	cytosol	59.27	52.21
Zm00001d026621_P006	Maize	cytosol	57.39	50.33
KXG27434	Sorghum	cytosol	57.14	49.57
TraesCS2D01G561900.1	Wheat	cytosol	57.27	49.41
TraesCS2A01G592600.1	Wheat	cytosol	57.27	49.41
Os04t0677700-00	Rice	cytosol	54.51	48.88
TraesCS2B01G591600.2	Wheat	cytosol	56.02	48.75
Zm00001d001828_P033	Maize	cytosol	56.02	48.48
GSMUA_Achr9P23740_001	Banana	golgi	61.03	46.47
Solyc02g078800.2.1	Tomato	extracellular	43.86	34.01
Solyc09g010620.1.1	Tomato	cytosol	5.14	25.15
Solyc09g065290.2.1	Tomato	cytosol, plastid	9.02	22.86
Solyc03g059100.1.1	Tomato	nucleus	9.02	22.09
Solyc02g091790.2.1	Tomato	cytosol, nucleus	8.52	21.66
Solyc11g005550.1.1	Tomato	cytosol	6.39	17.06
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	8.15	16.37
Solyc03g112530.2.1	Tomato	nucleus	9.52	15.8
Solyc01g094480.2.1	Tomato	nucleus	9.52	15.77
Solyc03g111740.2.1	Tomato	cytosol	8.52	14.11
Solyc08g067040.2.1	Tomato	nucleus	12.28	12.83

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043	GO:GO:0051013
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4B4Y6	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1
HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc02g021360.2
EnsemblPlants:Solyc02g021360.2.1	UniParc:UPI0002768817	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:K4B4Y6]

Coordinates

chr2:-:22514999..22534058

Molecular Weight (calculated)

87601.1 Da

IEP (calculated)

7.809

GRAVY (calculated)

-0.303

Length

798 amino acids

Sequence
(BLAST)

001: MTTTKRAYKL QEFVAHSLSV NCLKIGRKSS RVLLTGGEDH KVNLWAIGKP NAILSLSGHS SGIDSVSFDS SEVLVAAGAA SGTIKLWDLE EAKIVRTLTG
101: HRSNCISLDF HPFGEFFASG SLDTNLKIWD IRRKGCIHTY KGHSRGVNAI RFTPDGRWVV SGGEDNTVKL WDLTAGKLLH DFKCHEGQIQ CIDFHPHEFL
201: LATGSADRTV KFWDLETFEL IGSSGPETSG VRCMTFNPDG RTLLCGLHES LKVCSWEPIK CHDTVDVGWS RLSDLNIHEG KLLGCSYNQS CVGVWVVDIS
301: RLEPYAMGST TRLNGHSDVK SNSSMKLSNL AEDASKANLG RLSISQDSDP VKETKSFGRL SVSQNLDQRD SRALATTASA PGTPQRINLS VGSKAAPINT
401: TAVPNTTVLK RNSAKAQSTA NSSIINRSEI IPVIVPRNND RMEQASEPRK EGTATRAIQQ LSQTKVSDLR KFPTLKEDLG RSNAVSQSDI EVPKAIEFSS
501: IADKNIFPSV KCSILGAAAT ERNVKDDNSF VSTKPEMHSA PELLSRNQNE NYEARGNVVR SVNPMEGQRR ARTRSIVANW EKRERIQYQE CLAPSNVVGT
601: VPALNMLPIN SRGHPSSAGS VTVSATDEDV ITDLMEQHDQ FVGSMQSRLA KLQVVYQYWQ RHDTKGALNA TEKMADPAVL ADVISFLTEK NDMITLEICT
701: CLLPLLGGLL ESNLDRHQDI SLIMLLKLVK VYGSVIYSSI SAPASVGVDI EAEQRMERYN LCFVELEKVK NWLPALTRRG GSIAKSAQEL SLALQDFS

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.