Factsheet for GSMUA_Achr4P05370_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27210_001	Banana	golgi	51.2	85.84
VIT_10s0071g01150.t01	Wine grape	cytosol	66.96	66.62
KRG93160	Soybean	cytosol	61.29	64.03
KRH56498	Soybean	cytosol	60.4	63.11
GSMUA_Achr9P23740_001	Banana	golgi	81.08	61.35
Solyc02g021360.2.1	Tomato	cytosol	61.66	61.28
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	26.73	57.14
Solyc04g008720.2.1	Tomato	cytosol	57.25	56.05
PGSC0003DMT400065114	Potato	cytosol	57.25	55.98
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	57.38	54.36
CDX88026	Canola	cytosol	55.61	53.2
CDY60225	Canola	cytosol	55.23	52.46
CDX81101	Canola	cytosol	55.11	51.96
AT5G08390.1	Thale cress	cytosol	54.73	51.73
Bra005990.1-P	Field mustard	cytosol	54.85	51.3
CDX80363	Canola	cytosol	54.73	51.06
TraesCS2D01G561900.1	Wheat	cytosol	59.52	51.03
TraesCS2A01G592600.1	Wheat	cytosol	59.39	50.92
Zm00001d026621_P006	Maize	cytosol	58.26	50.77
KXG27434	Sorghum	cytosol	58.76	50.65
Zm00001d001828_P033	Maize	cytosol	58.51	50.33
TraesCS2B01G591600.2	Wheat	cytosol	58.13	50.27
Os04t0677700-00	Rice	cytosol	55.36	49.33
Bra009683.1-P	Field mustard	cytosol	54.85	48.01
GSMUA_Achr1P08830_001	Banana	cytosol	46.28	37.91
GSMUA_Achr8P10200_001	Banana	cytosol	3.53	31.46
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	8.95	21.07
GSMUA_Achr8P28660_001	Banana	cytosol	8.7	20.47
GSMUA_Achr7P01850_001	Banana	plastid	5.93	20.09
GSMUA_Achr3P04370_001	Banana	cytosol	8.07	19.88
GSMUA_Achr2P08580_001	Banana	cytosol	7.06	19.72
GSMUA_Achr11P...	Banana	cytosol	7.94	18.26
GSMUA_Achr8P10210_001	Banana	cytosol	2.14	17.89
GSMUA_Achr6P13100_001	Banana	cytosol	6.43	16.78
GSMUA_Achr3P29050_001	Banana	nucleus	9.96	16.53
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	9.84	16.05
GSMUA_Achr2P06000_001	Banana	cytosol	8.7	14.56
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	1.64	13.83
GSMUA_Achr4P29380_001	Banana	nucleus	11.22	12.52
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	3.03	8.7

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043	GO:GO:0051013
EnsemblPlantsGene:GSMUA_Achr4G05370_001	EnsemblPlants:GSMUA_Achr4P05370_001	EnsemblPlants:GSMUA_Achr4T05370_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	UniProt:M0SLA4	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295D5B9	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Katanin p80 WD40 repeat-containing subunit B1 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G05370_001]

Coordinates

chr4:-:4145557..4158415

Molecular Weight (calculated)

86672.7 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.333

Length

793 amino acids

Sequence
(BLAST)

001: MATTKRAYKL RILFFFFSRP TRVNLEEFVA HSSSVNCLKI GRKTSRVLVT GGEDNKVNIW AIGKPNAILS LSGHMSAVES VSFDSSEILV AAGAASGSVK
101: LWDLEEAKIV RTLTGHRSNC IAVDFHPFGE FFASGSLDTN LKIWDIRRKG CIHTYKGHSR GVNAIKFTPD GRWVVSGGED NTVKLWDLTA GKLLHDFKFH
201: EGQIQCIDFH PHEFLLATGS ADRTVKLWDL ETFELIGSAG PETSGVRSMT FNPDGRTLLC GLHESLKVVS WEPIRSHDTV DVGWSRLSDM NIHEGKLLGC
301: SYNQSCVGVW VVDLSRIEPY AISGAARSNG HSEPKSTSSG NPSTQTDNNI KSSMGRLSIS QSSEANAKET KPEASAASIP GTPQRTGTNA GVKTTTTAPT
401: PVSTTSKRSS SKAQATTNLQ TINKSDIIPV IVPRTNPRGE LSSDSTKVTG VGRTIPYDIQ SKFANFRKVS NIRENSDKAD MSIESGLVGN RNTEQNEYLG
501: QTSISSANAV TQLVTAGENN QDGVRRVITG RGRLNSFRES TANYDQENYN IKIEKPKEVC PIDVPQRGRT RSIASNWERR ECSPSYEGPV SSNSSETMMA
601: TSSLYSLRGH NRFAEETVPA SDEDSISILL EKHDQFLNLT QSRLIKLQVV SRLWERNDVK GVVGAIEKMS DYAVSADVLG CLKDKGDIVT LDICMSLLPL
701: LTGLLESNMD RHVGVSLGML LTLVRIFGPV IHSTLSAGPS VGVDLQAEQR LERCNSCFIE LEKVKHRISS MSRRGGSIAK AAQELNLALQ EVL

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.