Factsheet for GSMUA_Achr8P28660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	26.11	93.62
GSMUA_Achr2P06000_001	Banana	cytosol	84.57	60.13
Solyc03g111740.2.1	Tomato	cytosol	68.25	47.72
PGSC0003DMT400039207	Potato	cytosol	68.84	45.58
KRH57171	Soybean	cytosol	68.55	44.94
KRH03886	Soybean	nucleus	67.95	44.55
VIT_17s0000g09750.t01	Wine grape	cytosol	65.88	42.86
CDY05801	Canola	cytosol	63.5	42.63
AT5G50230.1	Thale cress	cytosol	64.09	42.44
Zm00001d033994_P002	Maize	mitochondrion, nucleus	59.05	39.25
Bra037932.1-P	Field mustard	mitochondrion	63.2	37.04
CDY05802	Canola	mitochondrion	62.91	36.87
Os03t0746600-01	Rice	nucleus	55.79	36.79
TraesCS5D01G394200.1	Wheat	cytosol	54.9	35.85
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	54.01	35.34
KXG37566	Sorghum	plastid	57.86	33.91
GSMUA_Achr6P13100_001	Banana	cytosol	23.15	25.66
GSMUA_Achr3P04370_001	Banana	cytosol	22.55	23.6
GSMUA_Achr7P01850_001	Banana	plastid	15.73	22.65
GSMUA_Achr2P08580_001	Banana	cytosol	17.51	20.77
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	20.18	20.18
GSMUA_Achr11P...	Banana	cytosol	20.47	20.0
GSMUA_Achr8P10200_001	Banana	cytosol	5.04	19.1
GSMUA_Achr3P29050_001	Banana	nucleus	22.85	16.11
GSMUA_Achr3P27210_001	Banana	golgi	18.99	13.53
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	18.69	12.96
GSMUA_Achr8P10210_001	Banana	cytosol	3.26	11.58
GSMUA_Achr4P29380_001	Banana	nucleus	19.58	9.28
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	7.42	9.06
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	20.47	8.7
GSMUA_Achr1P08830_001	Banana	cytosol	20.18	7.02
GSMUA_Achr9P23740_001	Banana	golgi	20.47	6.58
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	5.64	5.12

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr8G28660_001	EnsemblPlants:GSMUA_Achr8P28660_001	EnsemblPlants:GSMUA_Achr8T28660_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0TUG9	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000295B0DD	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

Putative Protein tipD [Source:GMGC_GENE;Acc:GSMUA_Achr8G28660_001]

Coordinates

chr8:+:31387874..31388983

Molecular Weight (calculated)

36640.1 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.211

Length

337 amino acids

Sequence
(BLAST)

001: MYEDMMQQLK VSSIEQLARQ QVDGIVRQRE AGYVDHVEST VPSSCKHTLH AHEGGCGSIL FQNNSDKLIS GGQDRTVKIW DTKSGTLSST LHGCLGSLLD
101: LAITHDNRFI IAASSSNNLY VWETSSGRVR HTLTGHTDKV CAVDASKVSS RNLVSAAYDH TMKVWDLVKG YCTNTIIFQS NCNSLSYTMD GLTFCSGHVD
201: GNLRIWDSRM GKVVGEVAAH SQAVTSIYVS QSGNLLLTSG RDNLHNLFDL RTLEICGTFR ANGNRVASNW SRSCISPDEK CVTAGSSDGS IYIWSRLNNN
301: MLSILEGHSS PVLSCAYGGP GNTLASADKN GNLCIWC

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.