Factsheet for HORVU5Hr1G094540.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G394200.1	Wheat	cytosol	95.73	95.54
Os03t0746600-01	Rice	nucleus	76.89	77.5
Zm00001d033994_P002	Maize	mitochondrion, nucleus	76.12	77.32
KXG37566	Sorghum	plastid	76.7	68.7
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	10.1	55.32
GSMUA_Achr8P28660_001	Banana	cytosol	35.34	54.01
PGSC0003DMT400039207	Potato	cytosol	52.43	53.05
GSMUA_Achr2P06000_001	Banana	cytosol	48.74	52.95
CDY05801	Canola	cytosol	50.49	51.79
AT5G50230.1	Thale cress	cytosol	50.87	51.47
Solyc03g111740.2.1	Tomato	cytosol	48.16	51.45
KRH57171	Soybean	cytosol	51.07	51.17
KRH03886	Soybean	nucleus	50.49	50.58
VIT_17s0000g09750.t01	Wine grape	cytosol	50.1	49.81
Bra037932.1-P	Field mustard	mitochondrion	50.29	45.04
CDY05802	Canola	mitochondrion	49.9	44.7
HORVU7Hr1G111780.2	Barley	cytosol, plastid	13.4	19.94
HORVU2Hr1G041020.2	Barley	cytosol, plastid	13.79	19.72
HORVU4Hr1G009500.1	Barley	cytosol, plastid	13.01	19.31
HORVU6Hr1G063000.1	Barley	cytosol	11.84	19.18
HORVU3Hr1G013230.4	Barley	cytosol	13.4	17.25
HORVU0Hr1G027010.1	Barley	plastid	11.84	16.99
HORVU1Hr1G095080.1	Barley	cytosol, plastid	15.92	16.3
HORVU2Hr1G022250.4	Barley	mitochondrion	13.2	13.71
HORVU3Hr1G035450.7	Barley	mitochondrion	13.2	13.28
HORVU5Hr1G075920.16	Barley	nucleus	14.56	10.2
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	12.62	8.63
HORVU1Hr1G061600.22	Barley	cytosol	13.2	8.37
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	13.2	7.05

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287SBS9	InterPro:Autophagy-rel_prot_16	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU5Hr1G094540	EnsemblPlants:HORVU5Hr1G094540.7	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08614	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B46049E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:596196032..596198544

Molecular Weight (calculated)

56214.8 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.334

Length

515 amino acids

Sequence
(BLAST)

001: RTQAEADAGK AAIRRALRSL RRRHLVEEGA HRPAIEALNR PFAAHALEWK EKAEKNELEL QQCYKAQSRL SEQLVSEINE AKTSKALLKE KEALITTLQS
101: ELGQTREENV QLKESLEEKT NALDLLIQEH QAAKAELERV LTKLKAVEHE NTQLVERLMQ AKMVEAEKLN EANAMYEEMV LKLKAAGLGA GGIQHNAQQE
201: ADGVIRRSEA GYVDIMETPI PSTCRVTIRA HDGGCGSIIF QNNTDKLISG GQDQTVKIWS AHTGALTSTL QGCLGTVNDL AVTNDNKFVI AACSSNKLFV
301: WEINGGRPRH TLTGHTKNVC SVGASWAKSL VIASSSNDRT IKIWDLQTGF CKSTIMSASN PNTLAFIHGD SICSGHRDGS LKFHDIRSGK CFATVAGHAD
401: VSSVCVTRSK NHVLSSGRDG VHKLFDVRMP TEVVEICGTF RAPSNRLIGS WGRACISPDE NCIAAGCSDG SVCIWSRSKN EGPTILEGHS LPVVTSAWSE
501: FGPLATADKN HIHIW

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.