CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033994_P002	Maize	mitochondrion, nucleus	82.43	93.49
Os03t0746600-01	Rice	nucleus	72.52	81.6
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	68.7	76.7
TraesCS5D01G394200.1	Wheat	cytosol	68.7	76.55
GSMUA_Achr8P28660_001	Banana	cytosol	33.91	57.86
PGSC0003DMT400039207	Potato	cytosol	50.26	56.78
GSMUA_Achr2P06000_001	Banana	cytosol	46.43	56.33
KRH57171	Soybean	cytosol	49.91	55.84
KRH03886	Soybean	nucleus	49.74	55.64
Solyc03g111740.2.1	Tomato	cytosol	46.61	55.6
AT5G50230.1	Thale cress	cytosol	47.3	53.44
CDY05801	Canola	cytosol	46.43	53.19
VIT_17s0000g09750.t01	Wine grape	cytosol	47.65	52.9
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	8.52	52.13
Bra037932.1-P	Field mustard	mitochondrion	47.3	47.3
CDY05802	Canola	mitochondrion	46.96	46.96
EES05216	Sorghum	cytosol	13.04	24.75
OQU91075	Sorghum	cytosol	13.22	23.82
KXG36525	Sorghum	plastid	12.52	21.88
EER90141	Sorghum	plastid	12.7	21.28
EES18812	Sorghum	cytosol	13.74	16.49
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	11.3	16.33
KXG25821	Sorghum	cytosol	12.35	14.82
EES04226	Sorghum	nucleus	11.3	9.1
OQU91573	Sorghum	plastid	12.0	7.89
KXG27434	Sorghum	cytosol	12.35	7.72
OQU87670	Sorghum	cytosol	10.78	7.45

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1B6QI26	InterPro:Autophagy-rel_prot_16	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KXG37566	ProteinID:KXG37566	ProteinID:KXG37566.1	PFAM:PF00400	PFAM:PF08614	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320
EnsemblPlantsGene:SORBI_3001G092100	SUPFAM:SSF50978	UniParc:UPI00081ADF48	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:7117645..7120928

Molecular Weight (calculated)

62591.9 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.327

Length

575 amino acids

Sequence
(BLAST)

001: MFGPTLSSTS PSPLAGPGAA SASSSSSFFW FRLVFNEDPT EAPWPWLRTE ATGRAASISP AAAEIHGRMT MAEAEAGRAA IRRALRSLKR RHLAEEGAHS
101: PAIEALTRPF AAHALEWKEK AEKHEVELQH CYKAQSRLSE QLVTEIEEGK ASKALLKEKE AMVTSLQAEL EKSSEENVQL KQSLDEKTKA LDLLIQEHQT
201: VKAEHEQALT KLKAAEDENQ SLIDRWMLEK MKDAEKLNEA NAMYEEMVLK LKTAGVGGIQ LNAQQEADGI IRRSEAGYME TSIPSTCTVT IRAHDGGCGS
301: LMFEHNSDKL ISGGQDQTLK IWSASTGALT STLHGCLGSV NDLAVTNDNK FVVAACSSNK LFVWEVNGGR PRHTLTGHTK NVSSVDASWV KSFVVASSSN
401: DRTIKTWDLQ TGFCKSTIMS ASNPNSLAFI DGDIICSGHR DGNLRLWDVR SGKCTTQIAA HLDVTSVCVS RSKNFILTSG RDNVHNLFDV RTLEICGTFR
501: AMGNKVVGSW SKPCISPDEN CIAAGSSDGS VYIWSRLKNG TPTILEGHSS PVLASAWCGL GPLATSDRNH IYLWS

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.