Factsheet for Bra037932.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05801	Canola	cytosol	86.09	98.61
AT5G50230.1	Thale cress	cytosol	79.3	89.59
KRH03886	Soybean	nucleus	65.04	72.76
KRH57171	Soybean	cytosol	64.87	72.57
PGSC0003DMT400039207	Potato	cytosol	62.09	70.14
Solyc03g111740.2.1	Tomato	cytosol	58.09	69.29
VIT_17s0000g09750.t01	Wine grape	cytosol	61.57	68.34
GSMUA_Achr8P28660_001	Banana	cytosol	37.04	63.2
GSMUA_Achr2P06000_001	Banana	cytosol	50.61	61.39
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	9.22	56.38
Os03t0746600-01	Rice	nucleus	48.17	54.21
Zm00001d033994_P002	Maize	mitochondrion, nucleus	47.3	53.65
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	45.04	50.29
TraesCS5D01G394200.1	Wheat	cytosol	45.04	50.19
KXG37566	Sorghum	plastid	47.3	47.3
Bra024323.1-P	Field mustard	cytosol	11.83	22.9
Bra003387.1-P	Field mustard	cytosol	12.7	21.73
Bra019610.1-P	Field mustard	plastid	11.65	21.14
Bra018529.1-P	Field mustard	cytosol	10.78	19.02
Bra004783.1-P	Field mustard	cytosol, golgi	13.57	18.8
Bra016111.1-P	Field mustard	cytosol	12.87	18.55
Bra003910.1-P	Field mustard	cytosol	12.17	18.52
Bra009201.1-P	Field mustard	nucleus	13.91	16.67
Bra022611.1-P	Field mustard	cytosol	12.87	15.55
Bra003111.1-P	Field mustard	nucleus	6.26	15.52
Bra012753.1-P	Field mustard	cytosol	11.48	13.72
Bra021188.1-P	Field mustard	cytosol	11.3	13.08
Bra007287.1-P	Field mustard	cytosol	8.87	12.75
Bra023416.1-P	Field mustard	nucleus	12.52	11.13
Bra006202.1-P	Field mustard	nucleus	12.7	11.03
Bra005990.1-P	Field mustard	cytosol	12.52	8.49
Bra009683.1-P	Field mustard	cytosol	12.52	7.95
Bra031445.1-P	Field mustard	cytosol	13.04	6.68

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Autophagy-rel_prot_16	EnsemblPlantsGene:Bra037932	EnsemblPlants:Bra037932.1	EnsemblPlants:Bra037932.1-P
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FA18	PFAM:PF00400	PFAM:PF08614	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002544828	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT5G50230 (E=1e-259) | nucleotide binding

Coordinates

chrA10:+:111906..115621

Molecular Weight (calculated)

63081.0 Da

IEP (calculated)

7.053

GRAVY (calculated)

-0.306

Length

575 amino acids

Sequence
(BLAST)

001: MPGSSLIMVG VLAQRGVVAI GLRAMEGPLL KDLRSQRNTR VSGPVVVYCG SLSCHNSHSS SMASSVWSQE EKAMEAIKDA LRALRQRHLL EEGAHGPAIS
101: ALSKPMISQG SEWKEKTEKL EIELQQCYKA QSRLSEQLVI EVAESRTSKS SLQDKELLIL GLDKDLSQTR EECTRLQQEL EEKTKTLDLL ITENKEVRSQ
201: LEVMTNRAQK AESENKMLID RWMLQKMQDA ERLNEANALY EEMLAKLKAN GLENLARQQV DGIVRRNEDG TDHFVESTIP STCGHRIHAH EGGCGSILFE
301: YSSRTLFTGG QAGPVKMWDT NSGSLIKSLN GSLGNILDLA ITHDNKSLIA ASSSNNLFVW DVNSGRVRHT LTGHTDKVCA VDVSKFSSRH VVSAAYDRTI
401: KLWDLQKGYC TNTVLFTSNC NAICLSIDGL TVFSGHMDGN LRLWDIQTAK LLSEVAGHSS AVTSVSLSRN GNMILTSGRD NVHNVFDTRT LEICGTLRAS
501: GNRLASNWSR SCISPDDEYV AAGSSDGTVH VWSISKGSIV STLKEQTSPI LCCSWSGIGK PLASADKNGY VCTWT

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.