Factsheet for Bra023416.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85646	Canola	nucleus	99.07	99.07
CDX91118	Canola	nucleus	97.99	98.45
Bra006202.1-P	Field mustard	nucleus	92.58	90.48
AT5G13480.2	Thale cress	nucleus	85.32	84.02
KRH13395	Soybean	nucleus	70.79	64.15
KRH20750	Soybean	nucleus	70.02	63.27
VIT_13s0019g00220.t01	Wine grape	nucleus	72.64	60.8
GSMUA_Achr4P29380_001	Banana	nucleus	66.31	60.34
Solyc08g067040.2.1	Tomato	nucleus	69.24	58.64
EES04226	Sorghum	nucleus	64.45	58.4
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	64.61	58.22
TraesCS5A01G293600.2	Wheat	nucleus	62.91	57.24
TraesCS5B01G292800.1	Wheat	nucleus	62.91	57.08
TraesCS5D01G300900.1	Wheat	nucleus	62.91	57.08
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	64.3	55.25
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	17.31	39.58
Bra019610.1-P	Field mustard	plastid	11.44	23.34
Bra018529.1-P	Field mustard	cytosol	11.75	23.31
Bra003387.1-P	Field mustard	cytosol	11.28	21.73
Bra024323.1-P	Field mustard	cytosol	9.43	20.54
Bra003111.1-P	Field mustard	nucleus	6.34	17.67
Bra009201.1-P	Field mustard	nucleus	12.98	17.5
Bra022611.1-P	Field mustard	cytosol	12.83	17.44
Bra016111.1-P	Field mustard	cytosol	10.51	17.04
Bra003910.1-P	Field mustard	cytosol	9.89	16.93
Bra004783.1-P	Field mustard	cytosol, golgi	10.66	16.63
Bra007287.1-P	Field mustard	cytosol	10.05	16.25
Bra012753.1-P	Field mustard	cytosol	11.59	15.59
Bra021188.1-P	Field mustard	cytosol	11.13	14.49
Bra037932.1-P	Field mustard	mitochondrion	11.13	12.52
Bra005990.1-P	Field mustard	cytosol	14.68	11.2
Bra009683.1-P	Field mustard	cytosol	14.06	10.04
Bra031445.1-P	Field mustard	cytosol	13.14	7.58

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra023416	EnsemblPlants:Bra023416.1	EnsemblPlants:Bra023416.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4E3R3	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254348E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT5G13480 (E=3e-256) FY | FY; protein binding

Coordinates

chrA02:-:3283843..3288016

Molecular Weight (calculated)

72425.4 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.794

Length

647 amino acids

Sequence
(BLAST)

001: MYGDSMQQQQ QQLPPMHHPP MMRQPSASST NINPDYHHSS APNHFDSHVD GFGGKRMRKH TQRRAVDYTS TVVRYIQART WQRDSRDMTS LQPTPAAAVD
101: MLPPVAYSDN PSTSFAAKFV HSSLNKNRCS INCVVWTPSG RRLITGSQSG EFTLWNGQSF NFEMILQAHD QPIRSMVWSH NDIWMVSGDD GGTIKYWQSN
201: MNNVKANRTA HKESVRGISF CKTDLKFCSC SDDTTVKVWD FAKCQEEISL TGHGWDVKCV DWHPTKSLLV SGGKDQLVKI WDTRTARELC SLHGHKNMVL
301: SVKWNQNGNW LLTASKDQIV KLYDIRTMKE LESFRGHKKD VTSLAWHPIH EEYFVSGSAD GSICHWIIGH ENPQIEISNA HDNSVWDLAW HPIGYLLCSG
401: SNDHTTKFWS RNRPADNPRD ALTMQNQGYN EQGFSNRMPD NFQPSEASPT PGAFVPGLTR NEGTIPGIGI AMPFDASSQG EHNQPLPGGM APPLPPGPHP
501: SLIGSSQQQG YQQQHHHQGH HPQQIPPMPN MPHLQRPPPS HMPLRPHHPR PMQMPPHMPP SSMPMTHQIP GPMGMQGGMN TQMSQGHYMG APSGPFPGPP
601: SSGGPPMYPQ GRGFNRPQMM QGYNNPFQQQ PPPLPAGPPP NTNQQHQ

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.