Factsheet for Bra012753.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra006747.1-P
Bra008559.1-P
Bra017569.1-P
Bra019993.1-P
Bra020357.1-P
Bra022023.1-P
Bra025031.1-P
Bra025379.1-P
Bra027160.1-P
Bra029577.1-P
Bra030798.1-P
Bra033088.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	Bra019993.1-P	AT1G09770.1	17575050
AT4G15900.1	Bra027160.1-P	AT1G09770.1	17575050
AT4G15900.1	Bra030798.1-P	AT1G09770.1	17575050
AT4G15900.1	Bra025379.1-P	AT3G29160.1	10220464
AT4G15900.1	Bra033088.1-P	AT3G29160.1	10220464
AT4G15900.1	Bra000891.1-P	AT4G02150.1	9765207
AT4G15900.1	Bra008559.1-P	AT4G02150.1	9765207
AT4G15900.1	Bra029577.1-P	AT4G05420.1	18223036
AT4G15900.1	Bra017569.1-P	AT5G46210.1	18223036
AT4G15900.1	Bra022023.1-P	AT5G46210.1	18223036
AT4G15900.1	Bra025031.1-P	AT5G46210.1	18223036
AT4G15900.1	Bra006747.1-P	AT5G58720.1	10220464
AT4G15900.1	Bra020357.1-P	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09730	Canola	cytosol	99.79	99.79
CDX90556	Canola	cytosol	99.58	99.58
AT4G15900.1	Thale cress	cytosol	93.35	92.39
GSMUA_Achr8P10200_001	Banana	cytosol	15.8	85.39
Bra007287.1-P	Field mustard	cytosol	67.57	81.25
GSMUA_Achr8P10210_001	Banana	cytosol	16.01	81.05
KRH37088	Soybean	nucleus	79.83	80.5
KRH12069	Soybean	nucleus	79.63	80.46
VIT_05s0077g02310.t01	Wine grape	cytosol	79.21	78.72
Bra021188.1-P	Field mustard	cytosol	78.79	76.26
Os03t0339100-01	Rice	nucleus	72.97	74.36
TraesCS3B01G205300.1	Wheat	cytosol	74.01	74.32
TraesCS3D01G181100.1	Wheat	cytosol	74.01	74.32
KXG25821	Sorghum	cytosol	73.8	74.11
TraesCS3A01G175600.2	Wheat	plastid	73.6	74.06
Zm00001d033309_P003	Maize	cytosol	72.97	72.67
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	72.97	72.22
PGSC0003DMT400023040	Potato	mitochondrion	45.53	71.34
Solyc09g010620.1.1	Tomato	cytosol	22.25	65.64
HORVU3Hr1G035450.7	Barley	mitochondrion	69.44	65.23
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	34.51	60.14
Bra024323.1-P	Field mustard	cytosol	13.72	22.22
Bra018529.1-P	Field mustard	cytosol	14.35	21.17
Bra003111.1-P	Field mustard	nucleus	9.77	20.26
Bra019610.1-P	Field mustard	plastid	12.68	19.24
Bra003387.1-P	Field mustard	cytosol	13.1	18.75
Bra016111.1-P	Field mustard	cytosol	13.93	16.79
Bra004783.1-P	Field mustard	cytosol, golgi	13.72	15.9
Bra009201.1-P	Field mustard	nucleus	15.8	15.83
Bra022611.1-P	Field mustard	cytosol	15.59	15.76
Bra003910.1-P	Field mustard	cytosol	11.85	15.08
Bra023416.1-P	Field mustard	nucleus	15.59	11.59
Bra037932.1-P	Field mustard	mitochondrion	13.72	11.48
Bra006202.1-P	Field mustard	nucleus	15.59	11.33
Bra005990.1-P	Field mustard	cytosol	15.38	8.73
Bra009683.1-P	Field mustard	cytosol	14.97	7.95
Bra031445.1-P	Field mustard	cytosol	17.26	7.4

Protein Annotations

MapMan:16.4.5.1.3	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra012753	EnsemblPlants:Bra012753.1	EnsemblPlants:Bra012753.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006508	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009719	GO:GO:0009749	GO:GO:0009755	GO:GO:0009790	GO:GO:0009791
GO:GO:0009870	GO:GO:0009987	GO:GO:0010154	GO:GO:0010182	GO:GO:0010204	GO:GO:0019538
GO:GO:0042742	GO:GO:0045892	GO:GO:0048364	GO:GO:0048366	GO:GO:0048825	GO:GO:0050832
GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4D8E3	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19923	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0002540849	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT4G15900 (E=2e-264) PRL1 | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding

Coordinates

chrA03:+:22424546..22427876

Molecular Weight (calculated)

53388.4 Da

IEP (calculated)

9.174

GRAVY (calculated)

-0.485

Length

481 amino acids

Sequence
(BLAST)

001: MPAATTEAES IEPQSLKKLS IKSLKRALDL FSPVHGQFPP PDAEAKKIRL SHKMKVAFGG VEPVSQPPRQ PDRGNEHTGT SSALALPGPE GSKSTQKGVT
101: ENALVVGPTF QPKGLNSIGT SGKSTTIIPA NVSSYERNFS TSALMERIPS RWPRPEWHAP WKNYRVIQGH LGWVRSVAFD PSNEWFCTGS ADRTIKIWDV
201: ATGVLKLTLT GHIEQVRGLA VSNRHTYMFS AGDDKQVKCW DLEQNKVIRS YHGHLSGVYC LALHPTLDVL LTGGRDSVCR VWDIRTKMQI FALTGHDNTV
301: CSVFTRPTDP QVVTGSHDTT IKFWDLRYGK TMTTLTHHKK SVRAMTLHPK ENAFASASAD NTKKFSLPKG EFCHNMLSQQ KTIINAMAVN EDGVMVTGGD
401: NGSIWFWDWK SGHSFQQSET IVQPGSLESE AGIYAACYDQ TGSRLVTCEA DKTIKMWKED ENATPETHPV NFKPPKEIRR F

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.