Factsheet for Bra019993.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012753.1-P
Bra015322.1-P
Bra021297.1-P
Bra022288.1-P
Bra030575.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09770.1	Bra015322.1-P	AT1G04510.1	19629177
AT1G09770.1	Bra030575.1-P	AT1G04510.1	19629177
AT1G09770.1	Bra021297.1-P	AT3G18165.1	17575050
AT1G09770.1	Bra022288.1-P	AT3G18165.1	17575050
AT1G09770.1	Bra012753.1-P	AT4G15900.1	17575050

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93482	Canola	nucleus	97.27	97.16
Bra030798.1-P	Field mustard	nucleus	93.72	93.39
AT1G09770.1	Thale cress	nucleus	89.81	89.81
Bra027160.1-P	Field mustard	nucleus	23.22	83.05
KRG92639	Soybean	nucleus	74.17	65.01
KRH34143	Soybean	nucleus	73.22	64.24
Zm00001d042287_P001	Maize	extracellular, nucleus, plasma membrane	70.26	64.11
PGSC0003DMT400029953	Potato	nucleus	71.45	61.16
Os04t0348300-01	Rice	nucleus	70.26	61.01
Solyc04g009950.2.1	Tomato	nucleus	71.33	60.99
KXG34025	Sorghum	nucleus	70.5	60.53
EES15997	Sorghum	nucleus	70.62	60.45
VIT_14s0036g00510.t01	Wine grape	nucleus	68.6	58.6
TraesCS5D01G460800.1	Wheat	nucleus	69.55	57.95
TraesCS5B01G459200.1	Wheat	nucleus	69.79	57.58
TraesCS5A01G450800.1	Wheat	nucleus	69.43	57.12
HORVU5Hr1G108630.3	Barley	nucleus	70.02	55.86
TraesCS5D01G314000.1	Wheat	nucleus	69.67	55.52
HORVU5Hr1G080010.3	Barley	nucleus	70.02	55.23
TraesCS5A01G307100.1	Wheat	nucleus	69.79	54.49
TraesCS5B01G307500.2	Wheat	nucleus	69.91	54.43
GSMUA_Achr9P23340_001	Banana	nucleus	70.97	53.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:15.5.2.2	MapMan:16.4.5.1.2	EnsemblPlantsGene:Bra019993	EnsemblPlants:Bra019993.1
EnsemblPlants:Bra019993.1-P	InterPro:Cdc5p/Cef1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DU00	InterPro:Myb_dom	PFAM:PF11831
PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF559	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253E921	SEG:seg	:	:	:

Description

AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor

Coordinates

chrA06:+:3341985..3344951

Molecular Weight (calculated)

95729.6 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.937

Length

844 amino acids

Sequence
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYEAADDPR KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIGNSHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEDLEGKRR ADVEAQLRKQ DVARNKIAER RDAPAAILQA NKMNDPEAVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELMEGS AATRALLANY SQTPRQGMTP LRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGDNPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG ASLTPRIGLT PSREGSSFAM TPRGTPFRDE LHINEDMDMH ENAKLERQRR EEARMSLRSG LTGLPQPRNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLRKRSKVLQ RDLPRPPAAS LELIRNSLLS ANRDKSSVVP PSPVDDADEM VRKELLQLLE HDNAKYPLDE
601: KAEKKKGGKN RANSSGSQVT AIEDFEENEL QEADKMIKEE AQFLCAAMGN ESKTFDEFVV AHDDCVKDIM YFPTRNAYGP SSVAVKAEKV AALQVEMENA
701: RKKMEEDEKK AEHMKAKYKT YTKGHEKRAE TVWSQIEASL KQIEIGGTEV ECFKALKRQE EMAASFRKKN LEEEVVKQKE TERRLQARYG ELLSTLEKAE
801: ELMVGFRAQA LKQTDVVEDS LNQKEAKLAT GEEEDVAISM EASA

Best Arabidopsis Sequence Match ( AT1G09770.1 )
(BLAST)

001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA

Arabidopsis Description

CDC5Cell division cycle 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:P92948]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.